Update main.nf

Mini fix for awsbatch stuff as found in nf-core/tools#447

main.nf

@@ -71,14 +71,14 @@ if( !(workflow.runName ==~ /[a-z]+_[a-z]+/) ){
 }
 
 
-if( workflow.profile == 'awsbatch') {
-  // AWSBatch sanity checking
-  if (!params.awsqueue || !params.awsregion) exit 1, "Specify correct --awsqueue and --awsregion parameters on AWSBatch!"
-   // Check outdir paths to be S3 buckets if running on AWSBatch
-  // related: https://github.com/nextflow-io/nextflow/issues/813
-  if (!params.outdir.startsWith('s3:')) exit 1, "Outdir not on S3 - specify S3 Bucket to run on AWSBatch!"
-  // Prevent trace files to be stored on S3 since S3 does not support rolling files.
-  if (workflow.tracedir.startsWith('s3:')) exit 1, "Specify a local tracedir or run without trace! S3 cannot be used for tracefiles."
+if (workflow.profile.contains('awsbatch')) {
+    // AWSBatch sanity checking
+    if (!params.awsqueue || !params.awsregion) exit 1, "Specify correct --awsqueue and --awsregion parameters on AWSBatch!"
+    // Check outdir paths to be S3 buckets if running on AWSBatch
+    // related: https://github.com/nextflow-io/nextflow/issues/813
+    if (!params.outdir.startsWith('s3:')) exit 1, "Outdir not on S3 - specify S3 Bucket to run on AWSBatch!"
+    // Prevent trace files to be stored on S3 since S3 does not support rolling files.
+    if (params.tracedir.startsWith('s3:')) exit 1, "Specify a local tracedir or run without trace! S3 cannot be used for tracefiles."
 }
 
 // Stage config files