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Modified single_cell_tutorial.md and added files needed for the tutorials #364

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Modified single_cell_tutorial.md and added files needed for the tutorials #364

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0c0bcde
Merge pull request #337 from nf-core/dev
ggabernet Jun 1, 2024
d91dd84
Merge pull request #358 from nf-core/dev
ggabernet Dec 11, 2024
46715c1
modify samplesheet.csv, added configuration, added airrflow executive…
Vivian0105 Jan 15, 2025
241b236
test github access
Vivian0105 Jan 15, 2025
135dfff
Update assets/tutorial/assemble.sh
Vivian0105 Jan 17, 2025
241c631
Delete test_github_access.sh
Vivian0105 Jan 17, 2025
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1 change: 1 addition & 0 deletions assets/tutorial/airrflow_test.sh
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nextflow run nf-core/airrflow -r 4.1.0 -profile test,docker --outdir test_results
9 changes: 9 additions & 0 deletions assets/tutorial/assemble.sh
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#!/usr/bin/bash

nextflow run nf-core/airrflow -r 4.2.0 \
-profile docker \
--mode assembled \
--input samplesheet.tsv \
--outdir results \
-c resource.config

3 changes: 3 additions & 0 deletions assets/tutorial/resource.config
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process {
resourceLimits = [ memory: 16.GB, time: 72.h, cpus: 8 ]
}
1 change: 0 additions & 1 deletion assets/tutorial/samplesheet.tsv
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Expand Up @@ -3,4 +3,3 @@ https://zenodo.org/records/11373741/files/AIRR_subject1_FNA_d0_1_Y1.tsv human S1
https://zenodo.org/records/11373741/files/AIRR_subject1_FNA_d12_3_Y1.tsv human S1 S1_d12 d12 PMBC NA NA NA IG TRUE
https://zenodo.org/records/11373741/files/AIRR_subject2_FNA_d0_1_Y1.tsv human S2 S2_d0 d0 PMBC NA NA NA IG TRUE
https://zenodo.org/records/11373741/files/AIRR_subject2_FNA_d12_2_Y1.tsv human S2 S2_d12 d12 PMBC NA NA NA IG TRUE

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