Add profiles that should be shared with all pipelines to configs #71
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apeltzer
approved these changes
Nov 19, 2019
apeltzer
approved these changes
Nov 19, 2019
ewels
reviewed
Nov 25, 2019
| config_profile_url = 'https://aws.amazon.com/batch/' | ||
| } | ||
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| aws.region = params.awsregion |
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This line causes the tests to fail 😱
ewels
reviewed
Nov 25, 2019
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| aws.region = params.awsregion | ||
| process.executor = 'awsbatch' | ||
| process.queue = params.awsqueue |
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This line will also cause problems.
ewels
reviewed
Nov 25, 2019
| process.executor = 'awsbatch' | ||
| process.queue = params.awsqueue | ||
| executor.awscli = '/home/ec2-user/miniconda/bin/aws' | ||
| params.tracedir = './' |
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Any reason not to group this together with the other params at the top?
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None, I just copied the config file we had on sarek
This was referenced Nov 26, 2019
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I do think
testanddebugshould be the only profiles to be specified at the pipeline level.So I'd like to include the following profile here:
I still think
conda,dockerandsingularityshould be included there, but I agree that we can do that one first, and then we'll see.