Code

Add BAGEL2 functionality#60

Code

Merged

LaurenceKuhl merged 46 commits intonf-core:devnf-core/crisprseq:devfrom LaurenceKuhl:bumpLaurenceKuhl/crisprseq:bumpCopy head branch name to clipboardNov 7, 2023

+1,583-46

Commits

Commits on Jul 14, 2023

• Extra files from mageck count

  LaurenceKuhl

  committed
  8f6af2d

• fix bug in rra

  LaurenceKuhl

  committed
  13181f0

Commits on Jul 21, 2023

• Add bagel fold change

  LaurenceKuhl

  committed
  b66f7e5

• Merge remote-tracking branch 'source_repo/dev' into bump

  LaurenceKuhl

  committed
  4faa210

Commits on Jul 27, 2023

• Trying to add BAGEL_BF

  LaurenceKuhl

  committed
  ac2ca2c

Commits on Jul 28, 2023

• Adding bagel2_bf

  LaurenceKuhl

  committed
  8a88803

Commits on Jul 31, 2023

• working modules of bagel

  LaurenceKuhl

  committed
  0bebd94

Commits on Aug 1, 2023

• All of the bagel modules and output graphs

  LaurenceKuhl

  committed
  a6d4090

Commits on Aug 8, 2023

• Bagel2

  LaurenceKuhl

  committed
  6ef05ac

• Add new features in changelog

  LaurenceKuhl

  committed
  7030145

• Fixed paired-end

  LaurenceKuhl

  committed
  5be5815

• Merge branch 'dev' into bump

  mirpedrol

  authored
  1d2dff0

Commits on Aug 9, 2023

• Update CHANGELOG.md

  Show description for 2519663
  

  LaurenceKuhl

  and

  mirpedrol

  authored
  2519663

• Update CHANGELOG.md

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  LaurenceKuhl

  and

  mirpedrol

  authored
  65c0f6f

• Update workflows/crisprseq_screening.nf

  Show description for 2be7f3b
  

  LaurenceKuhl

  and

  mirpedrol

  authored
  2be7f3b

• Update workflows/crisprseq_screening.nf

  Show description for ea07b75
  

  LaurenceKuhl

  and

  mirpedrol

  authored
  ea07b75

• Update workflows/crisprseq_screening.nf

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  LaurenceKuhl

  and

  mirpedrol

  authored
  9278293

• Update workflows/crisprseq_screening.nf

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  LaurenceKuhl

  and

  mirpedrol

  authored
  4cc4bba

• formatting

  LaurenceKuhl

  committed
  d0b21d9

• Merge branch 'bump' of https://github.com/LaurenceKuhl/crisprseq into bump

  Show description for ce6c7ee
  LaurenceKuhl

  committed
  ce6c7ee

• test

  LaurenceKuhl

  committed
  6c8993b

• Update workflows/crisprseq_screening.nf

  Show description for 29dc2bd
  

  LaurenceKuhl

  and

  mirpedrol

  authored
  29dc2bd

Commits on Aug 16, 2023

• Add doc

  LaurenceKuhl

  committed
  f8210a4

• fix meta id

  LaurenceKuhl

  committed
  e21fc25

• Ran nf-core modules patch

  LaurenceKuhl

  committed
  63f328a

• Add license

  LaurenceKuhl

  committed
  90eb287

Commits on Aug 23, 2023

• Update workflows/crisprseq_screening.nf

  Show description for 0d7aeb4
  

  LaurenceKuhl

  and

  mirpedrol

  authored
  0d7aeb4

Commits on Aug 24, 2023

• Add license

  LaurenceKuhl

  committed
  6b75dd9

• Merge branch 'dev' into bump

  LaurenceKuhl

  authored
  1bf922d

Commits on Oct 2, 2023

• Remove symlink issue

  LaurenceKuhl

  committed
  f2576c4

• Update module config

  LaurenceKuhl

  committed
  5d343af

Commits on Oct 24, 2023

• Add graphs for mageck rra

  LaurenceKuhl

  committed
  31a1103

Commits on Oct 25, 2023

• Update docs/usage/screening.md

  Show description for fef0481
  

  LaurenceKuhl

  and

  mirpedrol

  authored
  fef0481

• Update workflows/crisprseq_screening.nf

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  LaurenceKuhl

  and

  mirpedrol

  authored
  77f2509

• Modifications suggested by Julia

  LaurenceKuhl

  committed
  acd150d

• merge branch 'bump' of https://github.com/LaurenceKuhl/crisprseq into bump

  LaurenceKuhl

  committed
  0fefa45

• Take comments into account add license

  LaurenceKuhl

  committed
  718ceaa

Commits on Nov 3, 2023

• Add contrast file in the test

  LaurenceKuhl

  committed
  2a756b8

• remove condition

  LaurenceKuhl

  committed
  4a95736

Commits on Nov 7, 2023

• rollback on the condition in the samplesheet

  LaurenceKuhl

  committed
  9d67bd0

• [automated] Fix linting with Prettier

  nf-core-bot

  committed
  00d0d16

• ran prettier

  LaurenceKuhl

  committed
  0049dde

• Merge branch 'bump' of https://github.com/LaurenceKuhl/crisprseq into bump

  LaurenceKuhl

  committed
  fdc1c2c

• nf-core modules patch on mageck mle

  LaurenceKuhl

  committed
  e073518

• run black

  mirpedrol

  committed
  d5c59ab

• fix left-padding spaces

  mirpedrol

  committed
  4930690