Use templates for R scripts and use subworkflow for fitness calculation #19
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.1.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
mashehu
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mashehu
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didn't look into the R code, just general things
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| #!/usr/bin/env Rscript | |||
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don't forget to add a license statement to all your custom scripts
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| # Function to split a DNA sequence into codons (triplets) | ||
| split_into_codons <- function(seq) { | ||
| # WICHTIG: doppeltes escaping für perl regex |
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| # WICHTIG: doppeltes escaping für perl regex | |
| # Important: double escaping for perl regex |
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some more German to be replaced in other places
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no need to have so much white-space I think
| # [6] BiocGenerics_0.54.0 generics_0.1.4 | ||
| # | ||
| # loaded via a namespace (and not attached): | ||
| # [1] httr_1.4.7 compiler_4.5.1 R6_2.6.1 tools_4.5.1 |
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are you sure you want to hard code these like this?
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).