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Merge pull request #267 from WackerO/dev
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Minor fixes for release 1.5.0, update changelog
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WackerO authored May 8, 2024
2 parents 361fb75 + 3ec9d1e commit 1c4158e
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3 changes: 0 additions & 3 deletions .github/workflows/awsfulltest.yml
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Expand Up @@ -15,9 +15,6 @@ jobs:
steps:
- name: Launch workflow via tower
uses: seqeralabs/action-tower-launch@v2
# TODO nf-core: You can customise AWS full pipeline tests as required
# Add full size test data (but still relatively small datasets for few samples)
# on the `test_full.config` test runs with only one set of parameters
with:
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
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4 changes: 3 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -21,7 +21,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`

- [[#265](https://github.com/nf-core/differentialabundance/pull/265) - GSEA- pngs and htmls in same place ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#267](https://github.com/nf-core/differentialabundance/pull/267)] - Whitespace fix, remove TODO, also update changelog for release release 1.5.0 ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#265](https://github.com/nf-core/differentialabundance/pull/265)] - GSEA- pngs and htmls in same place ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
- [[#257](https://github.com/nf-core/differentialabundance/pull/257)] - Fixed FILTER_DIFFTABLE module, updated PROTEUS module to better handle whitespace in prefix param, made docs clearer ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#254](https://github.com/nf-core/differentialabundance/pull/254)] - Made differential_file_suffix optional ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#240](https://github.com/nf-core/differentialabundance/pull/240)] - Publish GSEA reports ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
Expand All @@ -35,6 +36,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Changed`

- [[#256](https://github.com/nf-core/differentialabundance/pull/256)] - Release 1.5.0 ([@WackerO](https://github.com/WackerO), review by [@maxulysse](https://github.com/maxulysse), [@pinin4fjords](https://github.com/pinin4fjords))
- [[#264](https://github.com/nf-core/differentialabundance/pull/264)] - Change FILTER_DIFFTABLE to python because AWK does not correctly filter reliably ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#232](https://github.com/nf-core/differentialabundance/pull/232)] - Mention missing dots in volcano plot, change rounding, turn off rounding by default ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords))

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2 changes: 1 addition & 1 deletion main.nf
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Expand Up @@ -17,7 +17,7 @@ nextflow.enable.dsl = 2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
*/

include { DIFFERENTIALABUNDANCE } from './workflows/differentialabundance'
include { DIFFERENTIALABUNDANCE } from './workflows/differentialabundance'
include { PIPELINE_INITIALISATION } from './subworkflows/local/utils_nfcore_differentialabundance_pipeline'
include { PIPELINE_COMPLETION } from './subworkflows/local/utils_nfcore_differentialabundance_pipeline'

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