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318 update for tes compliance #1221

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318 update for tes compliance

318 update for tes compliance #1221

Triggered via pull request September 16, 2024 06:22
@vsmalladivsmalladi
synchronize #320
318-update-for-tes-compliance
Status Failure
Total duration 1m 5s
Artifacts 1

linting.yml

on: pull_request
pre-commit
14s
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nf-core
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41 errors
nf-core
Process completed with exit code 1.
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
java.lang.RuntimeException: Different Snapshot: --- /tmp/expected10582063975505710763js +++ /tmp/found15406662742962211025json on @@ -1,5 @@ @@ +1,5 @@ 1 [ 1 [ 2 [ 2 [ ! 3 "versions.yml:md5,7c79d8a8b ! 3 "versions.yml:md5,3d6ee88cc 8e752bb3fc96b5ff08ae45e" e1ee517e198633f062589a8" 4 ] 4 ] 5 ] 5 ]
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 1 of 2 assertions failed
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 1 of 2 assertions failed
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
java.lang.RuntimeException: Different Snapshot: --- /tmp/expected5919677844606062565jso +++ /tmp/found6892016038364834372json n @@ -1,5 @@ @@ +1,5 @@ 1 [ 1 [ 2 [ 2 [ ! 3 "versions.yml:md5,7c79d8a8b ! 3 "versions.yml:md5,3d6ee88cc 8e752bb3fc96b5ff08ae45e" e1ee517e198633f062589a8" 4 ] 4 ] 5 ] 5 ]

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