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Refactor POC #652

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Refactor POC

Refactor POC #652

Triggered via pull request October 12, 2023 17:01
@maxulyssemaxulysse
synchronize #188
refactor
Status Failure
Total duration 4h 2m 39s
Artifacts –

ci.yml

on: pull_request
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Choose nextflow versions to test against depending on target branch
4s
Choose nextflow versions to test against depending on target branch
Matrix: test
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26 errors and 1 warning
sratools/prefetch docker NF latest-everything
Process completed with exit code 1.
sratools/prefetch docker NF latest-everything
Process completed with exit code 1.
custom/dumpsoftwareversions docker NF latest-everything
Process completed with exit code 1.
custom/dumpsoftwareversions docker NF latest-everything
Process completed with exit code 1.
sratools/fasterqdump docker NF latest-everything
Process completed with exit code 1.
sratools/fasterqdump docker NF latest-everything
Process completed with exit code 1.
sra_to_samplesheet docker NF latest-everything
Could not retrieve Nextflow release matching latest-everything. Server Error
sra_to_samplesheet docker NF latest-everything
Could not parse the download URL Cannot read properties of undefined (reading 'filter')
sra_to_samplesheet docker NF latest-everything
Invalid URL
sra_to_samplesheet docker NF latest-everything
Process completed with exit code 1.
sra_custom_ena_metadata_fields docker NF latest-everything
Process completed with exit code 1.
sra_custom_ena_metadata_fields docker NF latest-everything
Process completed with exit code 1.
sra_nf_core_pipeline_viralrecon docker NF latest-everything
Process completed with exit code 1.
sra_nf_core_pipeline_viralrecon docker NF latest-everything
Process completed with exit code 1.
sra_nf_core_pipeline_taxprofiler docker NF latest-everything
Process completed with exit code 1.
sra_nf_core_pipeline_taxprofiler docker NF latest-everything
Process completed with exit code 1.
sra_ids_to_runinfo docker NF latest-everything
Process completed with exit code 1.
sra_ids_to_runinfo docker NF latest-everything
Process completed with exit code 1.
sra_runinfo_to_ftp docker NF latest-everything
Process completed with exit code 1.
sra_runinfo_to_ftp docker NF latest-everything
Process completed with exit code 1.
multiqc_mappings_config docker NF latest-everything
Process completed with exit code 1.
multiqc_mappings_config docker NF latest-everything
Process completed with exit code 1.
sra_merge_samplesheet docker NF latest-everything
Process completed with exit code 1.
sra_merge_samplesheet docker NF latest-everything
Process completed with exit code 1.
sra_fastq_ftp docker NF latest-everything
Process completed with exit code 1.
sra_fastq_ftp docker NF latest-everything
Process completed with exit code 1.
sra_to_samplesheet docker NF latest-everything
Nextflow appears to have installed correctly, but an error was thrown while running it.