Skip to content
nf-core CI

Update all nf-core modules and subworkflows #787

Sign in to view logs

Update all nf-core modules and subworkflows

Update all nf-core modules and subworkflows #787

Triggered via pull request January 12, 2024 14:09
@drpatelhdrpatelh
opened #250
drpatelh:prerelease_fixes
Status Failure
Total duration 2m 58s
Artifacts –

ci.yml

on: pull_request
Check for changes
6s
Check for changes
Choose nextflow versions to test against depending on target branch
0s
Choose nextflow versions to test against depending on target branch
Matrix: test
Fit to window
Zoom out
Zoom in

Annotations

13 errors and 7 warnings
pipeline_fetchngs docker NF latest-everything
Process completed with exit code 1.
pipeline_fetchngs docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
pipeline_fetchngs docker NF latest-everything
Process completed with exit code 1.
subworkflows/utils_nfcore_pipeline docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/fastq_download_prefetch_fasterqdump_sratools docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
sratools/prefetch docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
custom/sratoolsncbisettings docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
untar docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
untar docker NF latest-everything
Process completed with exit code 1.
untar docker NF latest-everything
Process completed with exit code 1.
sratools/fasterqdump docker NF latest-everything
Process completed with exit code 1.
sratools/fasterqdump docker NF latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
sratools/fasterqdump docker NF latest-everything
Process completed with exit code 1.
pipeline_fetchngs docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/utils_nfcore_pipeline docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/fastq_download_prefetch_fasterqdump_sratools docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
sratools/prefetch docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
custom/sratoolsncbisettings docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
untar docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
sratools/fasterqdump docker NF latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23