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Update Github Action to run full-sized test for all 3 download methods #943

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Update Github Action to run full-sized test for all 3 download methods

Update Github Action to run full-sized test for all 3 download methods #943

Run time

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Job Run time
Check for changes
7s
Check for changes
7s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
44s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
44s
SRA_RUNINFO_TO_FTP docker NF-latest-everything
3m 19s
SRA_RUNINFO_TO_FTP docker NF-latest-everything
3m 18s
UNTAR docker NF-latest-everything
1m 41s
UNTAR docker NF-latest-everything
1m 41s
SRA docker NF-latest-everything
3m 36s
SRA docker NF-latest-everything
3m 36s
SRA_TO_SAMPLESHEET docker NF-latest-everything
3m 6s
SRA_TO_SAMPLESHEET docker NF-latest-everything
3m 6s
ASPERA_CLI docker NF-latest-everything
1m 8s
ASPERA_CLI docker NF-latest-everything
1m 8s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
1m 32s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
1m 32s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
1m 23s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
1m 23s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
53s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
53s
SRATOOLS_PREFETCH docker NF-latest-everything
3m 33s
SRATOOLS_PREFETCH docker NF-latest-everything
3m 33s
PIPELINE docker NF-latest-everything
12m 5s
PIPELINE docker NF-latest-everything
12m 5s
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
3m 14s
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
3m 14s
PIPELINE_INITIALISATION docker NF-latest-everything
34s
PIPELINE_INITIALISATION docker NF-latest-everything
34s
SRATOOLS_FASTERQDUMP docker NF-latest-everything
1m 44s
SRATOOLS_FASTERQDUMP docker NF-latest-everything
1m 44s
PIPELINE_COMPLETION docker NF-latest-everything
26s
PIPELINE_COMPLETION docker NF-latest-everything
26s
SRA_IDS_TO_RUNINFO docker NF-latest-everything
3m 14s
SRA_IDS_TO_RUNINFO docker NF-latest-everything
3m 14s
SRA_FASTQ_FTP docker NF-latest-everything
2m 29s
SRA_FASTQ_FTP docker NF-latest-everything
2m 29s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
1m 7s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
1m 7s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
39s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
39s
SRA_RUNINFO_TO_FTP docker NF-23.04
3m 11s
SRA_RUNINFO_TO_FTP docker NF-23.04
3m 11s
UNTAR docker NF-23.04
1m 47s
UNTAR docker NF-23.04
1m 47s
SRA docker NF-23.04
2m 54s
SRA docker NF-23.04
2m 54s
SRA_TO_SAMPLESHEET docker NF-23.04
3m 8s
SRA_TO_SAMPLESHEET docker NF-23.04
3m 8s
ASPERA_CLI docker NF-23.04
1m 5s
ASPERA_CLI docker NF-23.04
1m 5s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
1m 31s
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
1m 31s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
1m 14s
CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
1m 14s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 4s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 4s
SRATOOLS_PREFETCH docker NF-23.04
1m 23s
SRATOOLS_PREFETCH docker NF-23.04
1m 23s
PIPELINE docker NF-23.04
11m 55s
PIPELINE docker NF-23.04
11m 55s
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
3m 11s
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
3m 11s
PIPELINE_INITIALISATION docker NF-23.04
22s
PIPELINE_INITIALISATION docker NF-23.04
22s
SRATOOLS_FASTERQDUMP docker NF-23.04
3m 16s
SRATOOLS_FASTERQDUMP docker NF-23.04
3m 16s
PIPELINE_COMPLETION docker NF-23.04
25s
PIPELINE_COMPLETION docker NF-23.04
25s
SRA_IDS_TO_RUNINFO docker NF-23.04
3m 32s
SRA_IDS_TO_RUNINFO docker NF-23.04
3m 32s
SRA_FASTQ_FTP docker NF-23.04
2m 26s
SRA_FASTQ_FTP docker NF-23.04
2m 26s
UTILS_NFCORE_PIPELINE docker NF-23.04
1m 0s
UTILS_NFCORE_PIPELINE docker NF-23.04
1m 0s
confirm-pass
1s
confirm-pass
1s
2h 59m 57s