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Resolved bug when prefetching large studies #238

Merged
merged 3 commits into from
Jan 4, 2024
Merged

Resolved bug when prefetching large studies #238

merged 3 commits into from
Jan 4, 2024

Commits on Nov 7, 2023

  1. Resolved bug when prefetching large studies 

    Prefetching large studies resulted in error stated in issue

nf-core#236

Resolved this by handing over text file with filepaths instead
of list of filepaths. Rewrote sra_merge_samplesheet accordingly.

Tested with study with ~25k samples.
    Blaessle,Dr.,Alexander (GCBDS) BIP-DE-B committed Nov 7, 2023
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  2. Removed whitespaces/old code

    Blaessle,Dr.,Alexander (GCBDS) BIP-DE-B committed Nov 7, 2023
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Commits on Nov 13, 2023

  1. Substituted sra_merge_samplesheet module with collectFile statement

    Blaessle,Dr.,Alexander (GCBDS) BIP-DE-B committed Nov 13, 2023
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