Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Replace tags strategy with implicit 'tags in test' strategy #253

Merged
merged 22 commits into from
Jan 29, 2024
Merged

Replace tags strategy with implicit 'tags in test' strategy #253

merged 22 commits into from
Jan 29, 2024

Commits on Jan 18, 2024

  1. Replace tag strategy for testing 

    Changes:
 - All modules, subworkflows and workflows include their own name as a tag
 - All subworkflows and workflows include their dependencies as a tag
 - By detecting tags with `nf-test list --tags` we can extract all tags
 - Should be able to flag changed modules and dependent workflows without using a tags.yml file
    @adamrtalbot
    adamrtalbot committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    61e7662 View commit details
    Browse the repository at this point in the history

  2. Remove all tags.yml files

    @adamrtalbot
    adamrtalbot committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    34baed6 View commit details
    Browse the repository at this point in the history

  3. Tag order changed

    @adamrtalbot
    adamrtalbot committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    a6c34fc View commit details
    Browse the repository at this point in the history

  4. Replace tag logic in Github Action testing workflow

    @adamrtalbot
    adamrtalbot committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    76095d3 View commit details
    Browse the repository at this point in the history

  5. Fixup CI

    @adamrtalbot
    adamrtalbot committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    c325d8d View commit details
    Browse the repository at this point in the history

  6. Correct UTILS_NEXTFLOW_PIPELINE tag

    @adamrtalbot
    adamrtalbot committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    fe432bc View commit details
    Browse the repository at this point in the history

  7. ECLint

    @adamrtalbot
    adamrtalbot committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    bcae51a View commit details
    Browse the repository at this point in the history

Commits on Jan 19, 2024

  1. Use PIPELINE tag

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    b1b117d View commit details
    Browse the repository at this point in the history

  2. Add exclusion statments for linting files

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    7d88962 View commit details
    Browse the repository at this point in the history

  3. Add renamed files as deleted and added

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    c36a8aa View commit details
    Browse the repository at this point in the history

  4. Add another debugging step

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    412b059 View commit details
    Browse the repository at this point in the history

  5. Revert "Use PIPELINE tag" 

    This reverts commit b1b117d.
    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    2f6a78a View commit details
    Browse the repository at this point in the history

  6. Use PIPELINE tag

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    f28a336 View commit details
    Browse the repository at this point in the history

  7. Add files_yaml stuff for checking all

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    401f91d View commit details
    Browse the repository at this point in the history

  8. Add debug step

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    6cdff1c View commit details
    Browse the repository at this point in the history

  9. Refine pipeline and 'all' test rules

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    d490e6a View commit details
    Browse the repository at this point in the history

  10. Add shared tag to pipeline level tests

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    00c2ea0 View commit details
    Browse the repository at this point in the history

  11. Remove shared yaml anchor because I think it isn't needed

    @adamrtalbot
    adamrtalbot committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    4d2d566 View commit details
    Browse the repository at this point in the history

Commits on Jan 22, 2024

  1. Use collect and confirm strategy for tests 

    Replace Nextflow versioning with simple list matrix
    @adamrtalbot
    adamrtalbot committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    6c00433 View commit details
    Browse the repository at this point in the history

Commits on Jan 23, 2024

  1. Tag tidy based on review comments

    @adamrtalbot
    adamrtalbot committed Jan 23, 2024
    Configuration menu
    Copy the full SHA
    bc25627 View commit details
    Browse the repository at this point in the history

Commits on Jan 26, 2024

  1. Merge branch 'dev' into nftest_new_tags_strategy

    @adamrtalbot
    adamrtalbot committed Jan 26, 2024
    Configuration menu
    Copy the full SHA
    8946e2d View commit details
    Browse the repository at this point in the history

  2. Update tags for utils_nfcore_fetchngs_pipeline subworkflow

    @adamrtalbot
    adamrtalbot committed Jan 26, 2024
    Configuration menu
    Copy the full SHA
    cb4f0e6 View commit details
    Browse the repository at this point in the history