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Make gitignore match template #266

Merged
merged 2 commits into from
Feb 1, 2024
Merged

Make gitignore match template #266

merged 2 commits into from
Feb 1, 2024

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adamrtalbot
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@adamrtalbot adamrtalbot commented Feb 1, 2024 •
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Try to make the .gitignore match the template plus a few bits to trick nf-core lint.

I simply copied the template to the top of the file, then removed duplicates.

This is a hail mary.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/fetchngs branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Feb 1, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit cf07cad

+| ✅ 148 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   7 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • files_exist - File not found: lib/WorkflowFetchngs.groovy
  • nextflow_config - Config manifest.version should end in dev: 1.12.0
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.12.1
  • Run at 2024-02-01 18:14:25

@drpatelh drpatelh merged commit 3fa2f15 into nf-core:dev Feb 1, 2024
60 checks passed
@adamrtalbot adamrtalbot deleted the gitignore_match_template branch February 1, 2024 19:31
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@drpatelh drpatelh drpatelh approved these changes

@maxulysse maxulysse Awaiting requested review from maxulysse

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