Add support for presupplied annotation files (FAA + GFF or FAA + GBK) #1004

Job	Run time
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --profile docker,test_preannotated ...	18s
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --profile docker,test --annotation_...	16s
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prodigal)	33s
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --profile docker,test --annotation_...	23s
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)	35s
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --profile docker,test_pre...	16s
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...	23s
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --profile docker,test --a...	20s
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prodigal)	36s
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --profile docker,test --a...	18s
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)	36s
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...	20s
	4m 54s

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