Add support for presupplied annotation files (FAA + GFF or FAA + GBK) #1009

Job	Run time
Run pipeline with test data (BGC) (23.04.0, -profile docker,test_preannotated_bgc --annotation_to...	1m 24s
Run pipeline with test data (AMP/ARG) (23.04.0, -profile docker,test_preannotated --annotation_to...	14m 40s
Run pipeline with test data (BGC) (23.04.0, -profile docker,test_bgc --annotation_tool prokka)	1m 35s
Run pipeline with test data (AMP/ARG) (23.04.0, -profile docker,test --annotation_tool prokka)	10m 59s
Run pipeline with test data (BGC) (23.04.0, -profile docker,test_bgc --annotation_tool bakta --an...	1m 34s
Run pipeline with test data (AMP/ARG) (23.04.0, -profile docker,test --annotation_tool bakta --an...	10m 40s
Run pipeline with test data (BGC) (latest-everything, -profile docker,test_preannotated_bgc --ann...	1m 16s
Run pipeline with test data (AMP/ARG) (latest-everything, -profile docker,test_preannotated --ann...	14m 40s
Run pipeline with test data (BGC) (latest-everything, -profile docker,test_bgc --annotation_tool ...	1m 32s
Run pipeline with test data (AMP/ARG) (latest-everything, -profile docker,test --annotation_tool ...	10m 31s
Run pipeline with test data (BGC) (latest-everything, -profile docker,test_bgc --annotation_tool ...	1m 33s
Run pipeline with test data (AMP/ARG) (latest-everything, -profile docker,test --annotation_tool ...	10m 26s
	1h 20m 50s

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