Merge pull request #310 from tavareshugo/fix_gz

fix input schema to accept uncompressed fasta; fix #309

CHANGELOG.md

@@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#306](https://github.com/nf-core/funcscan/pull/306) Added new parameter `annotation_prokka_retaincontigheaders` to allow prokka to retain the original contig headers/locus tag. (by @darcy220606)
 - [#307](https://github.com/nf-core/funcscan/pull/307) Fixed stability of deepARG tests by using Zenodo copy of database (❤️ to Gustavo Arango and Liqing Zhang for uploading, fix by @jfy133)
+- [#310](https://github.com/nf-core/funcscan/pull/310) Fixed error when supplying uncompressed input; added "fas" file extension for FASTA files. (by @tavareshugo)
 
 ### `Dependencies`
 

assets/schema_input.json

@@ -18,8 +18,8 @@
                 "type": "string",
                 "format": "file-path",
                 "exists": true,
-                "pattern": "^\\S+\\.f(ast|n)?a\\.gz$",
-                "errorMessage": "Fasta file for reads must be provided, cannot contain spaces and must have extension '.fa.gz', '.fna.gz' or '.fasta.gz'",
+                "pattern": "^\\S+\\.(fasta|fas|fa|fna)(\\.gz)?$",
+                "errorMessage": "Fasta file for reads must be provided, cannot contain spaces and must have extension '.fasta', '.fas', '.fa' or '.fna' (any of these can be optionally compressed as '.gz')",
                 "unique": true
             }
         },