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Add nf-test#366

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jfy133 merged 55 commits intodevnf-core/funcscan:devfrom nf-test-conversionnf-core/funcscan:nf-test-conversionCopy head branch name to clipboardJul 12, 2024

+2,986-147

Commits

Commits on Apr 24, 2024

• Add nf-test skeleton

  jfy133

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• Deactivate check CI structure during linting

  jfy133

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Commits on May 7, 2024

• Implement nf-test for BGC workflow

  jasmezz

  committed
  998de1f

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• Implemented nf-test for AMP/ARG workflows (pyrodigal)

  jasmezz

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Commits on May 8, 2024

• Complete test_pyrodigal

  jasmezz

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Commits on May 17, 2024

• Merge branch 'nf-test-conversion' of https://github.com/nf-core/funcscan into nf-test-conversion

  Darcy220606

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Commits on May 22, 2024

• Fix test_pyrodigal, add test_prokka

  jasmezz

  committed
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Commits on May 27, 2024

• Merge branch 'nf-test-conversion' of https://github.com/nf-core/funcscan into nf-test-conversion

  Darcy220606

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  fb6363f

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• add taxonomy nftest

  Darcy220606

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Commits on May 28, 2024

• Add test_bakta

  jasmezz

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  f61f051

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• Update test_bakta

  jasmezz

  committed
  eb4556b

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Commits on Jun 12, 2024

• Fix snapshots

  jasmezz

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  5c4ab48

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Commits on Jun 13, 2024

• Merge branch 'dev' into nf-test-conversion

  jasmezz

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  0c8c1a4

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• Fix test profiles

  jasmezz

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  3df0b1a

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• Update ci.yml, changelog, multiqc, schema.json, fix linting

  jasmezz

  committed
  719f83c

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• Fix funcscan.nf, ci.yml

  jasmezz

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  c39a979

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• Fix linting for nextflow_schema.json

  jasmezz

  committed
  fad47e1

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Commits on Jun 19, 2024

• Update paths (test_bgc_pyrodigal)

  jasmezz

  committed
  7673f80

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Commits on Jun 23, 2024

• Merge branch 'dev' into nf-test-conversion

  jfy133

  committed
  42a849a

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• Merge branch 'nf-test-conversion' of github.com:nf-core/funcscan into nf-test-conversion

  jfy133

  committed
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• Standard test-data specification across all new configs

  jfy133

  committed
  0c552c1

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Commits on Jun 24, 2024

• Update schema (until fargene), update some tests

  jasmezz

  committed
  d96a513

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Commits on Jun 25, 2024

• Finish pyrodigal and prokka tests, update schema

  jasmezz

  committed
  f036b99

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Commits on Jun 26, 2024

• Deactivate hmmsearch by default, update MultiQC

  jasmezz

  committed
  96bb450

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• Finish taxonomy (bakta,prokka,pyrodigal) and bakta tests, update full test, update schema

  jasmezz

  committed
  516bce1

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• Update annotation_bakta_db param, add preannotated test (not working somehow)

  jasmezz

  committed
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Commits on Jun 28, 2024

• Complete full test

  jasmezz

  committed
  3d5876a

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• Unify all "database" parameters

  jasmezz

  committed
  8755057

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Commits on Jul 1, 2024

• Fix database params

  jasmezz

  committed
  b19f7e2

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Commits on Jul 2, 2024

• Fix full test

  jasmezz

  committed
  fc22654

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• Fix linting

  jasmezz

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Commits on Jul 3, 2024

• Finish full test

  jasmezz

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  4f756aa

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• Add preannotated tests

  jasmezz

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  4bdff2c

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• Merge branch 'dev' into nf-test-conversion

  jasmezz

  authored
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• Fix linting/missed merge conflict

  jasmezz

  committed
  1f617a5

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Commits on Jul 4, 2024

• Update taxonomy tests, update ci.yml

  jasmezz

  committed
  bad36bc

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• Merge branch 'dev' into nf-test-conversion

  jasmezz

  authored
  98c71b8

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• Update changelog

  jasmezz

  committed
  83841c5

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• Merge branch 'nf-test-conversion' of github.com:nf-core/funcscan into nf-test-conversion

  jasmezz

  committed
  088dbce

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• Fix preannotated test

  jasmezz

  committed
  af6b1fb

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• Updated failing taxonomy tests (snapshots missing)

  jasmezz

  committed
  6065c28

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Commits on Jul 5, 2024

• Add taxonomy_bakta snapshot

  jasmezz

  committed
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• Add taxonomy_prokka snapshot

  jasmezz

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  453c6a0

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• Merge branch 'dev' into nf-test-conversion

  jasmezz

  committed
  50ce8d5

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• Update changelog

  jasmezz

  committed
  746bbfa

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• Update preannotated test + snapshot

  jasmezz

  committed
  829c0e0

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• Remove deprecated ampcombi module

  jasmezz

  committed
  a0a5c9d

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• Fix linting, fix warning messages if no annotation files

  jasmezz

  committed
  48cb25e

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• Apply suggestions from code review

  jasmezz

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Commits on Jul 8, 2024

• Merge branch 'dev' into nf-test-conversion

  jasmezz

  committed
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• Merge branch 'dev' into nf-test-conversion

  jfy133

  committed
  ed9f265

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• Clean up and add missing version numbers to CHANGELOG

  jfy133

  committed
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• Apply suggestions from code review [skip ci]

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  jasmezz

  and

  jfy133

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Commits on Jul 9, 2024

• Apply suggestions from code review

  jasmezz

  committed
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Commits on Jul 12, 2024

• update test_full snap

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