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Gene overlap #94

Merged
merged 6 commits into from
Dec 1, 2024
Merged

Gene overlap #94

merged 6 commits into from
Dec 1, 2024

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chriswyatt1
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Added a module (local for now), that uses an R Script with GenomicRanges package from R, and produces a table of overlapping gene coordinates. It also prints to screen at the moment, the number of fully overlapping "contained" genes within a genome that are sense and antisense.
This will show if there are random genes that could be errors (in some assemblies).

@chriswyatt1
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I think this is ready to merge now.

Although I don't have unit testing on this module yet,,, not sure if this is essential right now, but it works for getting the stat for overlap genes.

@FernandoDuarteF
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I tested it and everything is working as expected.

I also checked the unfiltered gff files and got the same results. Just in case.

Good to go!

@chriswyatt1 chriswyatt1 merged commit 20bb70f into nf-core:dev Dec 1, 2024
@chriswyatt1
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Great, that all works, and have merged

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2 participants