Move domain classification test to adapterremoval test to reduce over…

…all number of test configs
nf-core · Jun 8, 2023 · 043750b · 043750b
1 parent e900c9c
commit 043750b
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Showing 2 changed files with 4 additions and 35 deletions.
diff --git a/conf/test_adapterremoval.config b/conf/test_adapterremoval.config
@@ -11,16 +11,16 @@
 */
 
 params {
-    config_profile_name        = 'Test profile for running with AdapterRemoval'
-    config_profile_description = 'Minimal test dataset to check pipeline function with AdapterRemoval data'
+    config_profile_name        = 'Test profile for running with AdapterRemoval and domain classification'
+    config_profile_description = 'Minimal test dataset to check pipeline function with AdapterRemoval data and domain classification.'
 
     // Limit resources so that this can run on GitHub Actions
     max_cpus   = 2
     max_memory = '6.GB'
     max_time   = '6.h'
 
     // Input data
-    input                       = 'https://raw.githubusercontent.com/nf-core/test-datasets/mag/samplesheets/samplesheet.csv'
+    input                       = 'https://raw.githubusercontent.com/nf-core/test-datasets/mag/samplesheets/samplesheet.euk.csv'
     centrifuge_db               = "https://raw.githubusercontent.com/nf-core/test-datasets/mag/test_data/minigut_cf.tar.gz"
     kraken2_db                  = "https://raw.githubusercontent.com/nf-core/test-datasets/mag/test_data/minigut_kraken.tgz"
     skip_krona                  = true
@@ -30,4 +30,5 @@ params {
     gtdb                        = false
     clip_tool                   = 'adapterremoval'
     skip_concoct                = true
+    bin_domain_classification   = true
 }
diff --git a/conf/test_domain_classification.config b/conf/test_domain_classification.config