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Important! Template update for nf-core/tools v2.10 #511

Merged
merged 7 commits into from
Sep 26, 2023
Merged

Important! Template update for nf-core/tools v2.10 #511

merged 7 commits into from
Sep 26, 2023

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nf-core-bot
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Version 2.10 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.10 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.10 release page.

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github-actions bot commented Sep 26, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 3f64e92

+| ✅ 158 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   3 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file [TODO: try and test using for --host_fasta and --host_genome]
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in WorkflowMag.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-09-26 12:25:35

@jfy133
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jfy133 commented Sep 26, 2023

@nf-core-bot fix linting

FriederikeHanssen
FriederikeHanssen reviewed Sep 26, 2023
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maxulysse
maxulysse reviewed Sep 26, 2023
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maxulysse
maxulysse reviewed Sep 26, 2023
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This was referenced Sep 26, 2023
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@jfy133 jfy133 merged commit 62b2d1c into dev Sep 26, 2023
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@jfy133 jfy133 deleted the nf-core-template-merge-2.10 branch October 4, 2023 10:11
@jfy133 jfy133 mentioned this pull request Oct 9, 2023
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@jfy133 jfy133 jfy133 left review comments

@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

@maxulysse maxulysse maxulysse approved these changes

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