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MHCquant 2.6.0 - Mr Bob

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@jonasscheid jonasscheid released this 17 Jun 16:31
2.6.0
1b30692
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Added

  • Added MS²Rescore module with the underlying python CLI #293
  • Added support for handling various archive formats: d|d.tar.gz|d.tar|d.zip|mzML.gz|raw|RAW|mzML #323
  • Added test for timsTOF data #323
  • Added new flag --ms2pip_model_dir, which allows specifying a cache directory for ms2pip models #322

Fixed

  • Create only one decoy database #299
  • Template update 2.11 #300
  • Template update 2.12 #303
  • Use groupKey to streamline group-wise processing #310
  • Replace PYOPENMS_IDFILTER with OPENMS_IDFILTER #310
  • Added nf-core modules #310
  • Template update 2.13 #311
  • Template update 2.13.1 #313
  • Template update 2.14.1 #320
  • Added stubs to local modules #326

Changed

  • Set identification mode as default and rename --skip_quantification to --quantify #323

Deprecated

  • Removed MS²PIP and DeepLC modules. These feature generators are now called via the MS²Rescore framework #293. --use_deeplc and --use_ms2pip were aligned with MS²Rescore's feature generators and can be specified now with --feature_generators deeplc,ms2pip. --ms2pip_model_name was renamed to --ms2pip_model
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