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pytest_modules.yml
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amps:
- modules/nf-core/amps/**
- tests/modules/nf-core/amps/**
angsd/contamination:
- modules/nf-core/angsd/contamination/**
- tests/modules/nf-core/angsd/contamination/**
angsd/docounts:
- modules/nf-core/angsd/docounts/**
- tests/modules/nf-core/angsd/docounts/**
arcashla/extract:
- modules/nf-core/arcashla/extract/**
- tests/modules/nf-core/arcashla/extract/**
ariba/getref:
- modules/nf-core/ariba/getref/**
- tests/modules/nf-core/ariba/getref/**
artic/guppyplex:
- modules/nf-core/artic/guppyplex/**
- tests/modules/nf-core/artic/guppyplex/**
artic/minion:
- modules/nf-core/artic/minion/**
- tests/modules/nf-core/artic/minion/**
ascat:
- modules/nf-core/ascat/**
- tests/modules/nf-core/ascat/**
ataqv/ataqv:
- modules/nf-core/ataqv/ataqv/**
- tests/modules/nf-core/ataqv/ataqv/**
ataqv/mkarv:
- modules/nf-core/ataqv/mkarv/**
- tests/modules/nf-core/ataqv/mkarv/**
authentict/deam2cont:
- modules/nf-core/authentict/deam2cont/**
- tests/modules/nf-core/authentict/deam2cont/**
bamtools/convert:
- modules/nf-core/bamtools/convert/**
- tests/modules/nf-core/bamtools/convert/**
bamtools/split:
- modules/nf-core/bamtools/split/**
- tests/modules/nf-core/bamtools/split/**
basicpy:
- modules/nf-core/basicpy/**
- tests/modules/nf-core/basicpy/**
bbmap/align:
- modules/nf-core/bbmap/align/**
- tests/modules/nf-core/bbmap/align/**
biohansel:
- modules/nf-core/biohansel/**
- tests/modules/nf-core/biohansel/**
cadd:
- modules/nf-core/cadd/**
- tests/modules/nf-core/cadd/**
canu:
- modules/nf-core/canu/**
- tests/modules/nf-core/canu/**
cellrangerarc/count:
- modules/nf-core/cellrangerarc/count/**
- tests/modules/nf-core/cellrangerarc/count/**
- modules/nf-core/cellrangerarc/mkref/**
- tests/modules/nf-core/cellrangerarc/mkref/**
cellrangerarc/mkfastq:
- modules/nf-core/cellrangerarc/mkfastq/**
- tests/modules/nf-core/cellrangerarc/mkfastq/**
cellrangerarc/mkref:
- modules/nf-core/cellrangerarc/mkref/**
- tests/modules/nf-core/cellrangerarc/mkref/**
- modules/nf-core/cellrangerarc/mkgtf/**
- tests/modules/nf-core/cellrangerarc/mkgtf/**
cellrangeratac/count:
- modules/nf-core/cellrangeratac/count/**
- tests/modules/nf-core/cellrangeratac/count/**
- modules/nf-core/cellrangeratac/mkref/**
- tests/modules/nf-core/cellrangeratac/mkref/**
cellrangeratac/mkfastq:
- modules/nf-core/cellrangeratac/mkfastq/**
- tests/modules/nf-core/cellrangeratac/mkfastq/**
cellrangeratac/mkref:
- modules/nf-core/cellrangeratac/mkref/**
- tests/modules/nf-core/cellrangeratac/mkref/**
clippy:
- modules/nf-core/clippy/**
- tests/modules/nf-core/clippy/**
cnvkit/export:
- modules/nf-core/cnvkit/export/**
- tests/modules/nf-core/cnvkit/export/**
cnvnator/cnvnator:
- modules/nf-core/cnvnator/cnvnator/**
- tests/modules/nf-core/cnvnator/cnvnator/**
cnvnator/convert2vcf:
- modules/nf-core/cnvnator/convert2vcf/**
- tests/modules/nf-core/cnvnator/convert2vcf/**
conifer:
- modules/nf-core/conifer/**
- tests/modules/nf-core/conifer/**
cooler/balance:
- modules/nf-core/cooler/balance/**
- tests/modules/nf-core/cooler/balance/**
cooler/cload:
- modules/nf-core/cooler/cload/**
- tests/modules/nf-core/cooler/cload/**
cooler/merge:
- modules/nf-core/cooler/merge/**
- tests/modules/nf-core/cooler/merge/**
cooler/zoomify:
- modules/nf-core/cooler/zoomify/**
- tests/modules/nf-core/cooler/zoomify/**
coreograph:
- modules/nf-core/coreograph/**
- tests/modules/nf-core/coreograph/**
crisprcleanr/normalize:
- modules/nf-core/crisprcleanr/normalize/**
- tests/modules/nf-core/crisprcleanr/normalize/**
custom/matrixfilter:
- modules/nf-core/custom/matrixfilter/**
- tests/modules/nf-core/custom/matrixfilter/**
custom/tabulartogseacls:
- modules/nf-core/custom/tabulartogseacls/**
- tests/modules/nf-core/custom/tabulartogseacls/**
custom/tabulartogseagct:
- modules/nf-core/custom/tabulartogseagct/**
- tests/modules/nf-core/custom/tabulartogseagct/**
cutesv:
- modules/nf-core/cutesv/**
- tests/modules/nf-core/cutesv/**
damageprofiler:
- modules/nf-core/damageprofiler/**
- tests/modules/nf-core/damageprofiler/**
dedup:
- modules/nf-core/dedup/**
- tests/modules/nf-core/dedup/**
deeptmhmm:
- modules/nf-core/deeptmhmm/**
- tests/modules/nf-core/deeptmhmm/**
duphold:
- modules/nf-core/duphold/**
- tests/modules/nf-core/duphold/**
eigenstratdatabasetools/eigenstratsnpcoverage:
- modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/**
- tests/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/**
elprep/merge:
- modules/nf-core/elprep/merge/**
- tests/modules/nf-core/elprep/merge/**
emboss/seqret:
- modules/nf-core/emboss/seqret/**
- tests/modules/nf-core/emboss/seqret/**
endorspy:
- modules/nf-core/endorspy/**
- tests/modules/nf-core/endorspy/**
entrezdirect/esearch:
- modules/nf-core/entrezdirect/esearch/**
- tests/modules/nf-core/entrezdirect/esearch/**
entrezdirect/xtract:
- modules/nf-core/entrezdirect/xtract/**
- tests/modules/nf-core/entrezdirect/xtract/**
expansionhunterdenovo/merge:
- modules/nf-core/expansionhunterdenovo/merge/**
- tests/modules/nf-core/expansionhunterdenovo/merge/**
fastk/histex:
- modules/nf-core/fastk/histex/**
- tests/modules/nf-core/fastk/histex/**
fastk/merge:
- modules/nf-core/fastk/merge/**
- tests/modules/nf-core/fastk/merge/**
fcs/fcsgx:
- modules/nf-core/fcs/fcsgx/**
- tests/modules/nf-core/fcs/fcsgx/**
fqtk:
- modules/nf-core/fqtk/**
- modules/nf-core/untar/**
- tests/modules/nf-core/fqtk/**
galah:
- modules/nf-core/galah/**
- tests/modules/nf-core/galah/**
gangstr:
- modules/nf-core/gangstr/**
- tests/modules/nf-core/gangstr/**
gatk/indelrealigner:
- modules/nf-core/gatk/indelrealigner/**
- tests/modules/nf-core/gatk/indelrealigner/**
gatk4/selectsamples:
- modules/nf-core/gatk4/selectsamples/**
- tests/modules/nf-core/gatk4/selectsamples/**
gem2/gem2bedmappability:
- modules/nf-core/gem2/gem2bedmappability/**
- tests/modules/nf-core/gem2/gem2bedmappability/**
gem2/gemindexer:
- modules/nf-core/gem2/gemindexer/**
- tests/modules/nf-core/gem2/gemindexer/**
gem2/gemmappability:
- modules/nf-core/gem2/gemmappability/**
- tests/modules/nf-core/gem2/gemmappability/**
genescopefk:
- modules/nf-core/genescopefk/**
- tests/modules/nf-core/genescopefk/**
genmap/map:
- modules/nf-core/genmap/map/**
- tests/modules/nf-core/genmap/map/**
genotyphi/parse:
- modules/nf-core/genotyphi/parse/**
- tests/modules/nf-core/genotyphi/parse/**
genrich:
- modules/nf-core/genrich/**
- tests/modules/nf-core/genrich/**
gfastats:
- modules/nf-core/gfastats/**
- tests/modules/nf-core/gfastats/**
gget/gget:
- modules/nf-core/gget/gget/**
- tests/modules/nf-core/gget/gget/**
gprofiler2/gost:
- modules/nf-core/gprofiler2/gost/**
- tests/modules/nf-core/gprofiler2/gost/**
graphmap2/align:
- modules/nf-core/graphmap2/align/**
- tests/modules/nf-core/graphmap2/align/**
graphtyper/genotype:
- modules/nf-core/graphtyper/genotype/**
- tests/modules/nf-core/graphtyper/genotype/**
grids/gridsssomaticfilter:
- modules/nf-core/grids/gridsssomaticfilter/**
- tests/modules/nf-core/grids/gridsssomaticfilter/**
gridss/gridssgenerateponbedpe:
- modules/nf-core/gridss/gridssgenerateponbedpe/**
- tests/modules/nf-core/gridss/gridssgenerateponbedpe/**
gsea/gsea:
- modules/nf-core/gsea/gsea/**
- tests/modules/nf-core/gsea/gsea/**
hicexplorer/hicpca:
- modules/nf-core/hicexplorer/hicpca/**
- tests/modules/nf-core/hicexplorer/hicpca/**
hlala/preparegraph:
- modules/nf-core/hlala/preparegraph/**
- tests/modules/nf-core/hlala/preparegraph/**
hlala/typing:
- modules/nf-core/hlala/typing/**
- tests/modules/nf-core/hlala/typing/**
hmmer/eslalimask:
- modules/nf-core/hmmer/eslalimask/**
- tests/modules/nf-core/hmmer/eslalimask/**
hmmer/eslreformat:
- modules/nf-core/hmmer/eslreformat/**
- tests/modules/nf-core/hmmer/eslreformat/**
hmtnote/annotate:
- modules/nf-core/hmtnote/annotate/**
- tests/modules/nf-core/hmtnote/annotate/**
icountmini/metagene:
- modules/nf-core/icountmini/metagene/**
- tests/modules/nf-core/icountmini/metagene/**
icountmini/peaks:
- modules/nf-core/icountmini/peaks/**
- tests/modules/nf-core/icountmini/peaks/**
icountmini/sigxls:
- modules/nf-core/icountmini/sigxls/**
- tests/modules/nf-core/icountmini/sigxls/**
icountmini/summary:
- modules/nf-core/icountmini/summary/**
- tests/modules/nf-core/icountmini/summary/**
ilastik/multicut:
- modules/nf-core/ilastik/multicut/**
- tests/modules/nf-core/ilastik/multicut/**
ilastik/pixelclassification:
- modules/nf-core/ilastik/pixelclassification/**
- tests/modules/nf-core/ilastik/pixelclassification/**
iphop/addtodb:
- modules/nf-core/iphop/addtodb/**
- tests/modules/nf-core/iphop/addtodb/**
iphop/download:
- modules/nf-core/iphop/download/**
- tests/modules/nf-core/iphop/download/**
iphop/predict:
- modules/nf-core/iphop/predict/**
- tests/modules/nf-core/iphop/predict/**
ivar/consensus:
- modules/nf-core/ivar/consensus/**
- tests/modules/nf-core/ivar/consensus/**
jupyternotebook:
- modules/nf-core/jupyternotebook/**
- tests/modules/nf-core/jupyternotebook/**
kat/hist:
- modules/nf-core/kat/hist/**
- tests/modules/nf-core/kat/hist/**
khmer/normalizebymedian:
- modules/nf-core/khmer/normalizebymedian/**
- tests/modules/nf-core/khmer/normalizebymedian/**
khmer/uniquekmers:
- modules/nf-core/khmer/uniquekmers/**
- tests/modules/nf-core/khmer/uniquekmers/**
kmcp/merge:
- modules/nf-core/kmcp/merge/**
- tests/modules/nf-core/kmcp/merge/**
kofamscan:
- modules/nf-core/kofamscan/**
- tests/modules/nf-core/kofamscan/**
krakentools/combinekreports:
- modules/nf-core/krakentools/combinekreports/**
- tests/modules/nf-core/krakentools/combinekreports/**
krakenuniq/build:
- modules/nf-core/krakenuniq/build/**
- tests/modules/nf-core/krakenuniq/build/**
krakenuniq/download:
- modules/nf-core/krakenuniq/download/**
- tests/modules/nf-core/krakenuniq/download/**
krona/kronadb:
- modules/nf-core/krona/kronadb/**
- tests/modules/nf-core/krona/kronadb/**
krona/ktimporttaxonomy:
- modules/nf-core/krona/ktimporttaxonomy/**
- tests/modules/nf-core/krona/ktimporttaxonomy/**
krona/ktimporttext:
- modules/nf-core/krona/ktimporttext/**
- tests/modules/nf-core/krona/ktimporttext/**
leehom:
- modules/nf-core/leehom/**
- tests/modules/nf-core/leehom/**
maxquant/lfq:
- modules/nf-core/maxquant/lfq/**
- tests/modules/nf-core/maxquant/lfq/**
megan/daa2info:
- modules/nf-core/megan/daa2info/**
- tests/modules/nf-core/megan/daa2info/**
melt:
- modules/nf-core/melt/**
- tests/modules/nf-core/melt/**
merquryfk/katcomp:
- modules/nf-core/merquryfk/katcomp/**
- tests/modules/nf-core/merquryfk/katcomp/**
merquryfk/katgc:
- modules/nf-core/merquryfk/katgc/**
- tests/modules/nf-core/merquryfk/katgc/**
merquryfk/ploidyplot:
- modules/nf-core/merquryfk/ploidyplot/**
- tests/modules/nf-core/merquryfk/ploidyplot/**
metaeuk/easypredict:
- modules/nf-core/metaeuk/easypredict/**
- tests/modules/nf-core/metaeuk/easypredict/**
metaphlan3/mergemetaphlantables:
- modules/nf-core/metaphlan3/mergemetaphlantables/**
- tests/modules/nf-core/metaphlan3/mergemetaphlantables/**
metaphlan3/metaphlan3:
- modules/nf-core/metaphlan3/metaphlan3/**
- tests/modules/nf-core/metaphlan3/metaphlan3/**
midas/run:
- modules/nf-core/midas/run/**
- tests/modules/nf-core/midas/run/**
mitohifi/findmitoreference:
- modules/nf-core/mitohifi/findmitoreference/**
- tests/modules/nf-core/mitohifi/findmitoreference/**
mitohifi/mitohifi:
- modules/nf-core/mitohifi/mitohifi/**
- tests/modules/nf-core/mitohifi/mitohifi/**
mmseqs/easysearch:
- modules/nf-core/mmseqs/easysearch/**
- tests/modules/nf-core/mmseqs/easysearch/**
mmseqs/search:
- modules/nf-core/mmseqs/search/**
- tests/modules/nf-core/mmseqs/search/**
mmseqs/tsv2exprofiledb:
- modules/nf-core/mmseqs/tsv2exprofiledb/**
- tests/modules/nf-core/mmseqs/tsv2exprofiledb/**
motus/downloaddb:
- modules/nf-core/motus/downloaddb/**
- tests/modules/nf-core/motus/downloaddb/**
msisensor/msi:
- modules/nf-core/msisensor/msi/**
- tests/modules/nf-core/msisensor/msi/**
msisensor/scan:
- modules/nf-core/msisensor/scan/**
- tests/modules/nf-core/msisensor/scan/**
msisensor2/msi:
- modules/nf-core/msisensor2/msi/**
- tests/modules/nf-core/msisensor2/msi/**
msisensorpro/msisomatic:
- modules/nf-core/msisensorpro/msisomatic/**
- tests/modules/nf-core/msisensorpro/msisomatic/**
muscle:
- modules/nf-core/muscle/**
- tests/modules/nf-core/muscle/**
nanomonsv/parse:
- modules/nf-core/nanomonsv/parse/**
- tests/modules/nf-core/nanomonsv/parse/**
ncbitools/vecscreen:
- modules/nf-core/ncbitools/vecscreen/**
- tests/modules/nf-core/ncbitools/vecscreen/**
oncocnv:
- modules/nf-core/oncocnv/**
- tests/modules/nf-core/oncocnv/**
parabricks/deepvariant:
- modules/nf-core/parabricks/deepvariant/**
- tests/modules/nf-core/parabricks/deepvariant/**
parabricks/haplotypecaller:
- modules/nf-core/parabricks/haplotypecaller/**
- tests/modules/nf-core/parabricks/haplotypecaller/**
parabricks/mutectcaller:
- modules/nf-core/parabricks/mutectcaller/**
- tests/modules/nf-core/parabricks/mutectcaller/**
paraclu:
- modules/nf-core/paraclu/**
- tests/modules/nf-core/paraclu/**
paragraph/idxdepth:
- modules/nf-core/paragraph/idxdepth/**
- tests/modules/nf-core/paragraph/idxdepth/**
paragraph/multigrmpy:
- modules/nf-core/paragraph/multigrmpy/**
- tests/modules/nf-core/paragraph/multigrmpy/**
phyloflash:
- modules/nf-core/phyloflash/**
- tests/modules/nf-core/phyloflash/**
plink/extract:
- modules/nf-core/plink/extract/**
- tests/modules/nf-core/plink/extract/**
plink/indep:
- modules/nf-core/plink/indep/**
- tests/modules/nf-core/plink/indep/**
plink/indeppairwise:
- modules/nf-core/plink/indeppairwise/**
- tests/modules/nf-core/plink/indeppairwise/**
plink/recode:
- modules/nf-core/plink/recode/**
- tests/modules/nf-core/plink/recode/**
pneumocat:
- modules/nf-core/pneumocat/**
- tests/modules/nf-core/pneumocat/**
pretextsnapshot:
- modules/nf-core/pretextsnapshot/**
- tests/modules/nf-core/pretextsnapshot/**
propr/logratio:
- modules/nf-core/propr/logratio/**
- tests/modules/nf-core/propr/logratio/**
proteus/readproteingroups:
- modules/nf-core/proteus/readproteingroups/**
- tests/modules/nf-core/proteus/readproteingroups/**
purecn/coverage:
- modules/nf-core/purecn/coverage/**
- tests/modules/nf-core/purecn/coverage/**
purecn/run:
- modules/nf-core/purecn/run/**
- tests/modules/nf-core/purecn/run/**
purgedups/calcuts:
- modules/nf-core/purgedups/calcuts/**
- tests/modules/nf-core/purgedups/calcuts/**
purgedups/getseqs:
- modules/nf-core/purgedups/getseqs/**
- tests/modules/nf-core/purgedups/getseqs/**
purgedups/histplot:
- modules/nf-core/purgedups/histplot/**
- tests/modules/nf-core/purgedups/histplot/**
purgedups/purgedups:
- modules/nf-core/purgedups/purgedups/**
- tests/modules/nf-core/purgedups/purgedups/**
pydamage/filter:
- modules/nf-core/pydamage/filter/**
- tests/modules/nf-core/pydamage/filter/**
raxmlng:
- modules/nf-core/raxmlng/**
- tests/modules/nf-core/raxmlng/**
rhocall/annotate:
- modules/nf-core/rhocall/annotate/**
- tests/modules/nf-core/rhocall/annotate/**
rmarkdownnotebook:
- modules/nf-core/rmarkdownnotebook/**
- tests/modules/nf-core/rmarkdownnotebook/**
roary:
- modules/nf-core/roary/**
- tests/modules/nf-core/roary/**
scramble/clusteranalysis:
- modules/nf-core/scramble/clusteranalysis/**
- tests/modules/nf-core/scramble/clusteranalysis/**
segemehl/align:
- modules/nf-core/segemehl/align/**
- tests/modules/nf-core/segemehl/align/**
semibin/singleeasybin:
- modules/nf-core/semibin/singleeasybin/**
- tests/modules/nf-core/semibin/singleeasybin/**
sequencetools/pileupcaller:
- modules/nf-core/sequencetools/pileupcaller/**
- tests/modules/nf-core/sequencetools/pileupcaller/**
seqwish/induce:
- modules/nf-core/seqwish/induce/**
- tests/modules/nf-core/seqwish/induce/**
sexdeterrmine:
- modules/nf-core/sexdeterrmine/**
- tests/modules/nf-core/sexdeterrmine/**
sgdemux:
- modules/nf-core/sgdemux/**
- modules/nf-core/untar/**
- tests/modules/nf-core/sgdemux/**
shigeifinder:
- modules/nf-core/shigeifinder/**
- tests/modules/nf-core/shigeifinder/**
shinyngs/staticdifferential:
- modules/nf-core/shinyngs/staticdifferential/**
- tests/modules/nf-core/shinyngs/staticdifferential/**
shinyngs/validatefomcomponents:
- modules/nf-core/shinyngs/validatefomcomponents/**
- tests/modules/nf-core/shinyngs/validatefomcomponents/**
snapaligner/align:
- modules/nf-core/snapaligner/align/**
- tests/modules/nf-core/snapaligner/align/**
snippy/core:
- modules/nf-core/snippy/core/**
- tests/modules/nf-core/snippy/core/**
somalier/ancestry:
- modules/nf-core/somalier/ancestry/**
- tests/modules/nf-core/somalier/ancestry/**
sourmash/gather:
- modules/nf-core/sourmash/gather/**
- tests/modules/nf-core/sourmash/gather/**
sourmash/taxannotate:
- modules/nf-core/sourmash/taxannotate/**
- tests/modules/nf-core/sourmash/taxannotate/**
spatyper:
- modules/nf-core/spatyper/**
- tests/modules/nf-core/spatyper/**
srst2/srst2:
- modules/nf-core/srst2/srst2/**
- tests/modules/nf-core/srst2/srst2/**
stecfinder:
- modules/nf-core/stecfinder/**
- tests/modules/nf-core/stecfinder/**
subworkflows/align_bowtie2:
- subworkflows/nf-core/align_bowtie2/**
- tests/subworkflows/nf-core/align_bowtie2/**
subworkflows/bam_cnv_wisecondorx:
- subworkflows/nf-core/bam_cnv_wisecondorx/**
- tests/subworkflows/nf-core/bam_cnv_wisecondorx/**
subworkflows/bam_docounts_contamination_angsd:
- subworkflows/nf-core/bam_docounts_contamination_angsd/**
- tests/subworkflows/nf-core/bam_docounts_contamination_angsd/**
subworkflows/bam_markduplicates_samtools:
- subworkflows/nf-core/bam_markduplicates_samtools/**
- tests/subworkflows/nf-core/bam_markduplicates_samtools/**
subworkflows/bam_ngscheckmate:
- subworkflows/nf-core/bam_ngscheckmate/**
- tests/subworkflows/nf-core/bam_ngscheckmate/**
subworkflows/bam_sort_samtools:
- subworkflows/nf-core/bam_sort_samtools/**
- tests/subworkflows/nf-core/bam_sort_samtools/**
subworkflows/bam_split_by_region:
- subworkflows/nf-core/bam_split_by_region/**
- tests/subworkflows/nf-core/bam_split_by_region/**
subworkflows/bam_tumor_normal_somatic_variant_calling_gatk:
- subworkflows/nf-core/bam_tumor_normal_somatic_variant_calling_gatk/**
- tests/subworkflows/nf-core/bam_tumor_normal_somatic_variant_calling_gatk/**
subworkflows/bam_tumor_only_somatic_variant_calling_gatk:
- subworkflows/nf-core/bam_tumor_only_somatic_variant_calling_gatk/**
- tests/subworkflows/nf-core/bam_tumor_only_somatic_variant_calling_gatk/**
subworkflows/bam_variant_calling_sort_freebayes_bcftools:
- subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/**
- tests/subworkflows/nf-core/bam_variant_calling_sort_freebayes_bcftools/**
subworkflows/bed_scatter_bedtools:
- subworkflows/nf-core/bed_scatter_bedtools/**
- tests/subworkflows/nf-core/bed_scatter_bedtools/**
subworkflows/fasta_clean_fcs:
- subworkflows/nf-core/fasta_clean_fcs/**
- tests/subworkflows/nf-core/fasta_clean_fcs/**
subworkflows/fasta_index_dna:
- subworkflows/nf-core/fasta_index_dna/**
- tests/subworkflows/nf-core/fasta_index_dna/**
subworkflows/fastq_align_bwaaln:
- subworkflows/nf-core/fastq_align_bwaaln/**
- tests/subworkflows/nf-core/fastq_align_bwaaln/**
subworkflows/fastq_align_chromap:
- subworkflows/nf-core/fastq_align_chromap/**
- tests/subworkflows/nf-core/fastq_align_chromap/**
subworkflows/fastq_contam_seqtk_kraken:
- subworkflows/nf-core/fastq_contam_seqtk_kraken/**
- tests/subworkflows/nf-core/fastq_contam_seqtk_kraken/**
subworkflows/fastq_create_umi_consensus_fgbio:
- subworkflows/nf-core/fastq_create_umi_consensus_fgbio/**
- tests/subworkflows/nf-core/fastq_create_umi_consensus_fgbio/**
subworkflows/fastq_trim_fastp_fastqc:
- subworkflows/nf-core/fastq_trim_fastp_fastqc/**
- tests/subworkflows/nf-core/fastq_trim_fastp_fastqc/**
subworkflows/gatk_create_som_pon:
- subworkflows/nf-core/gatk_create_som_pon/**
- tests/subworkflows/nf-core/gatk_create_som_pon/**
subworkflows/homer/groseq:
- subworkflows/nf-core/homer/groseq/**
- tests/subworkflows/nf-core/homer/groseq/**
subworkflows/multiple_impute_glimpse2:
- subworkflows/nf-core/multiple_impute_glimpse2/**
- tests/subworkflows/nf-core/multiple_impute_glimpse2/**
subworkflows/utils_nextflow_pipeline:
- subworkflows/nf-core/utils_nextflow_pipeline/**
- tests/subworkflows/nf-core/utils_nextflow_pipeline/**
subworkflows/utils_nfcore_pipeline:
- subworkflows/nf-core/utils_nfcore_pipeline/**
- tests/subworkflows/nf-core/utils_nfcore_pipeline/**
subworkflows/vcf_annotate_ensemblvep:
- subworkflows/nf-core/vcf_annotate_ensemblvep/**
- tests/subworkflows/nf-core/vcf_annotate_ensemblvep/**
subworkflows/vcf_annotate_snpeff:
- subworkflows/nf-core/vcf_annotate_snpeff/**
- tests/subworkflows/nf-core/vcf_annotate_snpeff/**
subworkflows/vcf_extract_relate_somalier:
- subworkflows/nf-core/vcf_extract_relate_somalier/**
- tests/subworkflows/nf-core/vcf_extract_relate_somalier/**
subworkflows/vcf_gather_bcftools:
- subworkflows/nf-core/vcf_gather_bcftools/**
- tests/subworkflows/nf-core/vcf_gather_bcftools/**
subworkflows/vcf_phase_shapeit5:
- subworkflows/nf-core/vcf_phase_shapeit5/**
- tests/subworkflows/nf-core/vcf_phase_shapeit5/**
survivor/filter:
- modules/nf-core/survivor/filter/**
- tests/modules/nf-core/survivor/filter/**
survivor/simsv:
- modules/nf-core/survivor/simsv/**
- tests/modules/nf-core/survivor/simsv/**
svaba:
- modules/nf-core/svaba/**
- tests/modules/nf-core/svaba/**
svtk/baftest:
- modules/nf-core/svtk/baftest/**
- tests/modules/nf-core/svtk/baftest/**
svtk/rdtest2vcf:
- modules/nf-core/svtk/rdtest2vcf/**
- tests/modules/nf-core/svtk/rdtest2vcf/**
svtk/standardize:
- modules/nf-core/svtk/standardize/**
- tests/modules/nf-core/svtk/standardize/**
svtk/vcf2bed:
- modules/nf-core/svtk/vcf2bed/**
- tests/modules/nf-core/svtk/vcf2bed/**
topas/gencons:
- modules/nf-core/topas/gencons/**
- tests/modules/nf-core/topas/gencons/**
transdecoder/predict:
- modules/nf-core/transdecoder/predict/**
- tests/modules/nf-core/transdecoder/predict/**
truvari/bench:
- modules/nf-core/truvari/bench/**
- tests/modules/nf-core/truvari/bench/**
ucsc/bedtobigbed:
- modules/nf-core/ucsc/bedtobigbed/**
- tests/modules/nf-core/ucsc/bedtobigbed/**
ultra/align:
- modules/nf-core/ultra/align/**
- tests/modules/nf-core/ultra/align/**
ultra/index:
- modules/nf-core/ultra/index/**
- tests/modules/nf-core/ultra/index/**
ultra/pipeline:
- modules/nf-core/ultra/pipeline/**
- tests/modules/nf-core/ultra/pipeline/**
universc:
- modules/nf-core/universc/**
- tests/modules/nf-core/universc/**
varlociraptor/callvariants:
- modules/nf-core/varlociraptor/callvariants/**
- tests/modules/nf-core/varlociraptor/callvariants/**
varlociraptor/preprocess:
- modules/nf-core/varlociraptor/preprocess/**
- tests/modules/nf-core/varlociraptor/preprocess/**
vcflib/vcfbreakmulti:
- modules/nf-core/vcflib/vcfbreakmulti/**
- tests/modules/nf-core/vcflib/vcfbreakmulti/**
vrhyme/extractunbinned:
- modules/nf-core/vrhyme/extractunbinned/**
- tests/modules/nf-core/vrhyme/extractunbinned/**
vrhyme/linkbins:
- modules/nf-core/vrhyme/linkbins/**
- tests/modules/nf-core/vrhyme/linkbins/**