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Pull requests: nf-core/modules

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Pull requests list

Fix MEGAHIT module: Modified syntax to accept --out-prefix variable downstream
#7522 opened Feb 27, 2025 by IceGreb Loading…
3 tasks done
[DO NOT MERGE] Test gpu runners
#7521 opened Feb 27, 2025 by mashehu • Draft
bioformats2raw module
#7518 opened Feb 26, 2025 by CaroAMN Loading…
8 of 9 tasks
1
compressing output files
#7507 opened Feb 20, 2025 by DimitriTernovoj Loading…
new module: FASTQDL
#7506 opened Feb 20, 2025 by camlloyd Loading…
11 of 17 tasks
1
Allow cram output for parabricks/fq2bam module and remove fastq_align_parabricks gpu module uses GPU
#7502 opened Feb 19, 2025 by famosab • Queued
17 tasks
17
Update version modules tcoffee to 13.46.1
#7498 opened Feb 19, 2025 by luisas Loading…
17 tasks
gatk4/markduplicates - pipe uncompressed output to speed up CRAM writing
#7497 opened Feb 18, 2025 by pontushojer • Draft
11 of 17 tasks
Krona module updates
#7489 opened Feb 16, 2025 by dialvarezs Loading…
2 of 17 tasks
Add index format to samtools view Ready for Review
#7481 opened Feb 14, 2025 by fellen31 Loading…
17 tasks
7
simplify assertion for stable files in a folder
#7462 opened Feb 10, 2025 by maxulysse • Draft
17 tasks
6
update prettier to 3.5.0
#7459 opened Feb 10, 2025 by mashehu Loading…
Rattle cluster
#7447 opened Feb 6, 2025 by chriswyatt1 Loading…
2
Update KRAKEN2/ADD to allow proper resuming
#7445 opened Feb 6, 2025 by jfy133 Loading…
17 tasks
New samtools/bgzip module to produce BGZF-compressed files.
#7433 opened Feb 5, 2025 by charles-plessy • Draft
17 tasks done
2
[DO NOT MERGE] Test PR to see how the template would look like when creating a new modules WIP Work in progress
#7430 opened Feb 4, 2025 by mirpedrol • Draft
8
Move output format information to the first queue channel of last/mafconvert
#7428 opened Feb 4, 2025 by charles-plessy Loading…
17 tasks done
Update biocontainers/cooler Docker tag to v0.10.3
#7419 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
Update biocontainers/cnvkit Docker tag to v0.9.12
#7418 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
Update dotnet monorepo
#7417 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
@maxulysse @edmundmiller
add another clean-up step to GHA
#7416 opened Jan 31, 2025 by mirpedrol Loading…
1
don't run nf-test if only meta.yml was changed
#7406 opened Jan 31, 2025 by mashehu Loading…
Add db to output meta object for diamond/blastp
#7403 opened Jan 30, 2025 by erikrikarddaniel Loading…
2 of 17 tasks
5
Hifiadapterfilt
#7398 opened Jan 30, 2025 by Ge94 Loading…
14 of 17 tasks
1
8
Fix falco sample names
#7394 opened Jan 30, 2025 by MartinGrignard Loading…
5
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