Skip to content

Pull requests: nf-core/modules

New pull request New
172 Open 6,226 Closed
172 Open 6,226 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add module cooltools/seigscis
#8721 opened Jun 26, 2025 by Thibault-Poinsignon Loading…
11 of 13 tasks
New module: KMA (based on https://github.com/nf-core/modules/pull/7251) new module Adding a new module
#8718 opened Jun 26, 2025 by HaidYi Loading…
11 of 16 tasks
1
@HaidYi
downgrade multiqc version to accommodate ARM
#8717 opened Jun 25, 2025 by tobsecret Loading…
2 tasks done
3
Adding cnaqc tool module
#8714 opened Jun 25, 2025 by vvvirgy Loading…
17 tasks
1
update varlociraptor/callvariants to only use scenarios
#8711 opened Jun 25, 2025 by famosab Loading…
17 tasks
Add scanpy/filter module awaiting-changes will be closed after 30 days new module Adding a new module
#8704 opened Jun 24, 2025 by nictru Loading…
9
Add scanpy/highlyvariablegenes
#8703 opened Jun 24, 2025 by nictru Loading…
Add scanpy/pca module
#8702 opened Jun 24, 2025 by nictru Loading…
New module: sigprofiler awaiting-changes will be closed after 30 days new module Adding a new module
#8698 opened Jun 24, 2025 by Katerina10-cloud Loading…
17 tasks
@Katerina10-cloud
13
New module: ctree
#8696 opened Jun 24, 2025 by elena-buscaroli Loading…
9 of 17 tasks
1
New module: taxonkit/list
#8680 opened Jun 19, 2025 by jcbioinformatics Loading…
13 of 14 tasks
New module: picard/splitsambynumberofreads new module Adding a new module Ready for Review
#8679 opened Jun 19, 2025 by Y-Pei Loading…
12 of 13 tasks
1
@Y-Pei
10
upload pyclonevi module
#8677 opened Jun 19, 2025 by giorgiagandolfi Loading…
17 tasks
1
2
split the fastq and fastq_idx outputs from cellranger mkfastq module
#8673 opened Jun 19, 2025 by gordond88 Loading…
1 of 5 tasks
1
Add module blast/tblastx
#8672 opened Jun 19, 2025 by snehaag006 Loading…
1
Add module of TINC tool new module Adding a new module Ready for Review
#8668 opened Jun 18, 2025 by valerianilucrezia Loading…
14 of 17 tasks
1
@valerianilucrezia
Mixcr
#8665 opened Jun 17, 2025 by derrik-gratz Loading…
14 tasks done
Bff
#8653 opened Jun 17, 2025 by LuisHeinzlmeier Loading…
25
Vizgenpostprocessing/runsegmentationontile
#8652 opened Jun 17, 2025 by mcmero Loading…
12 of 17 tasks
1
@mcmero
10
New module: mobster
#8647 opened Jun 16, 2025 by elena-buscaroli Loading…
9 of 17 tasks
1
18
New module: hashsolo new module Adding a new module
#8639 opened Jun 15, 2025 by seohyonkim • Draft
12 tasks done
1
4
new module: Souporcell new module Adding a new module
#8636 opened Jun 14, 2025 by seohyonkim • Draft
12 tasks done
1
2
add readgroup to fq2bam gpu module uses GPU
#8624 opened Jun 11, 2025 by famosab • Draft
17 tasks
8
Share conda across test
#8621 opened Jun 10, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
9
feat: support no reference tumor only cnvkit analysis
#8618 opened Jun 9, 2025 by znorgaard Loading…
5 tasks done
7
ProTip! Exclude everything labeled bug with -label:bug.