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Pull requests: nf-core/modules

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Pull requests list

Add Test Report
#7053 opened Nov 22, 2024 by edmundmiller • Draft
@edmundmiller
Add module gzrt (#6918)
#7052 opened Nov 21, 2024 by mazzalab Loading…
17 tasks
1
Added subworkflow fasta_gxf_busco_plot
#7051 opened Nov 21, 2024 by GallVp Loading…
2 of 17 tasks
1
1
bump regtools version
#7050 opened Nov 21, 2024 by abartlett004 Loading…
12 of 17 tasks
Bcftools convert migration to nf-test nf-test
#7049 opened Nov 21, 2024 by LouisLeNezet Loading…
4 of 17 tasks
Fix tcoffee alncompare
#7048 opened Nov 21, 2024 by luisas Loading…
12 of 14 tasks
update Trinity version
#7044 opened Nov 21, 2024 by avani-bhojwani Loading…
12 of 14 tasks
1
Include sizes in samtools faidx
#7041 opened Nov 20, 2024 by maxulysse Loading…
17 tasks
Update bowtie2 align test
#7038 opened Nov 20, 2024 by sateeshperi Loading…
@sateeshperi
2
bismark/align - use more descriptive variable names than it in test
#7035 opened Nov 20, 2024 by sateeshperi Loading…
@sateeshperi
Update bclconvert
#7034 opened Nov 20, 2024 by sateeshperi Loading…
2
Cellbender empty droplet removal new subworkflow Ready for Review
#7031 opened Nov 19, 2024 by chaochaowong Loading…
13 of 17 tasks
@SPPearce @nictru
5
PoC: Use Fusion for test workdir
#7030 opened Nov 19, 2024 by edmundmiller • Draft
@edmundmiller
build: Add nf-co2footprint to CI runs
#7029 opened Nov 19, 2024 by edmundmiller • Draft
@edmundmiller
Add pre filter and shard counting step
#7025 opened Nov 19, 2024 by mashehu Loading…
6
change stageInMode to copy and update module
#7014 opened Nov 18, 2024 by famosab Loading…
17 tasks
update preseq/lcextrap errorStrategy to ignore Ready for Review
#7011 opened Nov 18, 2024 by sateeshperi Loading…
5
Fasta index bismark bwameth new subworkflow Ready for Review
#7010 opened Nov 17, 2024 by sateeshperi Loading…
1
@sateeshperi
1
adding mgikit module
#7008 opened Nov 17, 2024 by ziadbkh Loading…
8 of 17 tasks
1
2
Fastq align dedup bwameth new subworkflow Ready for Review
#7007 opened Nov 17, 2024 by sateeshperi Loading…
1
@sateeshperi
fq lint module update: exit on failed validation
#7000 opened Nov 15, 2024 by oligomyeggo Loading…
17 tasks
9
Port sentieon bwaindex to nf-test
#6999 opened Nov 15, 2024 by maxulysse • Draft
17 tasks
2
build: Add environment.yml for doubletdetection
#6997 opened Nov 14, 2024 by edmundmiller Loading…
@edmundmiller
port parabricks/indexgvcf to nf-test gpu module uses GPU nf-test
#6996 opened Nov 14, 2024 by famosab Loading…
1 of 17 tasks
1
port parabricks/deepvariant to nf-test gpu module uses GPU help wanted Extra attention is needed nf-test
#6995 opened Nov 14, 2024 by famosab Loading…
1 of 17 tasks
1
ProTip! What’s not been updated in a month: updated:<2024-10-21.