Merge pull request #30 from nf-core/back_to_dev

Back to dev, add Zenodo doi
nf-core · Jun 12, 2023 · dd7c75e · dd7c75e
2 parents 7696c9a + 17bb14e
commit dd7c75e
Show file tree

Hide file tree

Showing 4 changed files with 15 additions and 7 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,16 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v1.1.0dev - [date]
+
+### `Added`
+
+### `Fixed`
+
+### `Dependencies`
+
+### `Deprecated`
+
 ## v1.0.0 - 2023-06-12 - Femtometre
 
 Initial release of nf-core/nanostring, created with the [nf-core](https://nf-co.re/) template.

diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
 # ![nf-core/nanostring](docs/images/nf-core-nanostring_logo_light.png#gh-light-mode-only) ![nf-core/nanostring](docs/images/nf-core-nanostring_logo_dark.png#gh-dark-mode-only)
 
-[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/nanostring/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/nanostring/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.8028303-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.8028303)
 
 [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/)
 [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
@@ -83,8 +83,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->
-<!-- If you use  nf-core/nanostring for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->
+If you use nf-core/nanostring for your analysis, please cite it using the following doi: [10.5281/zenodo.8028303](https://doi.org/10.5281/zenodo.8028303)
 
 An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.
 

diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy
@@ -11,9 +11,8 @@ class WorkflowMain {
     //
     public static String citation(workflow) {
         return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" +
-            // TODO nf-core: Add Zenodo DOI for pipeline after first release
-            //"* The pipeline\n" +
-            //"  https://doi.org/10.5281/zenodo.XXXXXXX\n\n" +
+            "* The pipeline\n" +
+            "  https://doi.org/10.5281/zenodo.8028303\n\n" +
             "* The nf-core framework\n" +
             "  https://doi.org/10.1038/s41587-020-0439-x\n\n" +
             "* Software dependencies\n" +

diff --git a/nextflow.config b/nextflow.config
@@ -212,7 +212,7 @@ manifest {
     description     = """A Nanostring nCounter analysis pipeline"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.0.0'
+    version = '1.1.0dev'
     doi             = ''
 }