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Improve multiqc report #23

Merged
merged 6 commits into from
Jun 7, 2023
Merged

Improve multiqc report #23

merged 6 commits into from
Jun 7, 2023

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christopher-mohr
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Just a couple of small improvements for the multiqc report.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/nanostring branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Jun 6, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit b4cec4f

+| ✅ 158 tests passed       |+
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: If applicable, make list of people who have also contributed
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-06-07 12:01:31

jfy133
jfy133 reviewed Jun 7, 2023
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Maybe a CHANGELOG update to draw people';s attention the output might look different might nice, but MultiQC wise looks good 👍 (I'm assuming teh write_out_prepared_gex is related to that)

@christopher-mohr
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Maybe a CHANGELOG update to draw people';s attention the output might look different might nice, but MultiQC wise looks good 👍 (I'm assuming teh write_out_prepared_gex is related to that)

Thank you!

@christopher-mohr christopher-mohr merged commit 4580494 into nf-core:dev Jun 7, 2023
@christopher-mohr christopher-mohr deleted the improve_multiqc_report branch June 7, 2023 12:15
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@christopher-mohr @jfy133