Merge pull request #146 from nf-core/update/modules

Update `vg deconstruct` to v1.50.1
nf-core · Aug 21, 2023 · 3053320 · 3053320
2 parents 818f809 + ffb263e
commit 3053320
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Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/modules/local/multiqc_community/main.nf b/modules/local/multiqc_community/main.nf
@@ -2,10 +2,10 @@ process MULTIQC_COMMUNITY {
     tag "$meta.id"
     label 'process_single'
 
-    conda "bioconda::multiqc=1.14"
+    conda "bioconda::multiqc=1.15"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.14--pyhdfd78af_0' :
-        'biocontainers/multiqc:1.14--pyhdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/multiqc:1.15--pyhdfd78af_0' :
+        'biocontainers/multiqc:1.15--pyhdfd78af_0' }"
 
     input:
     tuple val(meta), path(multiqc_files, stageAs: "?/*")

diff --git a/modules/local/paf2net/main.nf b/modules/local/paf2net/main.nf
@@ -2,10 +2,10 @@ process PAF2NET {
     tag "$meta.id"
     label 'process_single'
 
-    conda "bioconda::pggb=0.5.3"
+    conda "bioconda::pggb=0.5.4"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pggb:0.5.3--hdfd78af_2':
-        'biocontainers/pggb:0.5.3--hdfd78af_2' }"
+        'https://depot.galaxyproject.org/singularity/pggb:0.5.4--hdfd78af_0':
+        'biocontainers/pggb:0.5.4--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(paf)

diff --git a/modules/local/vg_deconstruct/main.nf b/modules/local/vg_deconstruct/main.nf
@@ -29,7 +29,7 @@ process VG_DECONSTRUCT {
         'https://depot.galaxyproject.org/singularity/pggb:0.5.3--hdfd78af_2':
         'quay.io/biocontainers/pggb:0.5.3--hdfd78af_2' }"
 */
-    container "ghcr.io/pangenome/pggb:2023062221192542ea28"
+    container "ghcr.io/pangenome/pggb:20230819064109936a2c"
 
     input:
     tuple val(meta), path(graph), val(vcf_spec)