remove 'data/' in example commands

nf-core · Dec 10, 2020 · 74e4b85 · 74e4b85
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diff --git a/README.md b/README.md
@@ -43,7 +43,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool
 5. Start running your own analysis!
 
     ```bash
-    nextflow run nf-core/pangenome -profile <docker/singularity/podman/conda/institute> --input 'data/*.fa.gz'
+    nextflow run nf-core/pangenome -profile <docker/singularity/podman/conda/institute> --input '*.fa.gz'
     ```
 
 See [usage docs](https://nf-co.re/pangenome/usage) for all of the available options when running the pipeline.

diff --git a/docs/usage.md b/docs/usage.md
@@ -13,7 +13,7 @@
 The typical command for running the pipeline is as follows:
 
 ```bash
-nextflow run nf-core/pangenome --input 'data/*.fa.gz' -profile docker
+nextflow run nf-core/pangenome --input '*.fa.gz' -profile docker
 ```
 
 This will launch the pipeline with the `docker` configuration profile. See below for more information about profiles.