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Add the possbility to compress the output files with pigz #55

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subwaystation opened this issue Mar 22, 2021 · 0 comments · Fixed by #60
Closed

Add the possbility to compress the output files with pigz #55

subwaystation opened this issue Mar 22, 2021 · 0 comments · Fixed by #60
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@AndreaGuarracino
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enhancement Improvement for existing functionality

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@subwaystation
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nf-core/pangenome feature request

Hi there!

Describe the solution you'd like

Introduce the --gzip-output parameter. Files generated by seqwish or smoothxg step should be compressed using pigz.
@subwaystation subwaystation added the enhancement Improvement for existing functionality label Mar 22, 2021
@AndreaGuarracino AndreaGuarracino self-assigned this Mar 23, 2021
@AndreaGuarracino AndreaGuarracino mentioned this issue Mar 23, 2021
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@AndreaGuarracino AndreaGuarracino

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enhancement Improvement for existing functionality
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added flag to compress the output files
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@subwaystation @AndreaGuarracino