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added flag to compress the output files #60

Merged
merged 9 commits into from
Mar 23, 2021
Merged

added flag to compress the output files #60

merged 9 commits into from
Mar 23, 2021

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AndreaGuarracino
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@AndreaGuarracino AndreaGuarracino commented Mar 23, 2021 •
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/pangenome branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

This fixes #55.

subwaystation
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@subwaystation
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LGTM :)

@subwaystation subwaystation merged commit e253556 into nf-core:dev Mar 23, 2021
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@subwaystation subwaystation subwaystation approved these changes

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Add the possbility to compress the output files with pigz
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@AndreaGuarracino @subwaystation