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Syncronize with pggb, more testing #29

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merged 6 commits into from
Dec 2, 2020

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PR checklist

This PR is trying to solve #26.
This PR affects Dockerfile, main.nf, and nextflow.config.

@subwaystation subwaystation changed the title halfway through Syncronize with pggb, more testing Dec 2, 2020
@subwaystation subwaystation marked this pull request as ready for review December 2, 2020 16:09
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subwaystation commented Dec 2, 2020

Hmm, if you take a look at https://github.com/nf-core/pangenome/pull/29/checks?check_run_id=1487357914, you can see that it does both --do_layout and --do_viz, although only one of them is specified. Any ideas why?! @Zethson

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LGTM

@subwaystation subwaystation merged commit bf2ff4d into nf-core:dev Dec 2, 2020
subwaystation added a commit that referenced this pull request Dec 16, 2022
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Markdown linting is failing

To keep the code consistent with lots of contributors, we run automated code consistency checks.
To fix this CI test, please run:

  • Install markdownlint-cli
  • Fix the markdown errors
    • Automatically: markdownlint . --config .github/markdownlint.yml --fix
    • Manually resolve anything left from markdownlint . --config .github/markdownlint.yml

Once you push these changes the test should pass, and you can hide this comment 👍

We highly recommend setting up markdownlint in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help!

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