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Wake me up when september ends #84

Merged
merged 24 commits into from
Sep 12, 2022
Merged

Wake me up when september ends #84

merged 24 commits into from
Sep 12, 2022

Commits on Sep 7, 2022

  1. define required parameters

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    subwaystation committed Sep 7, 2022
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  2. we actually want to call it n_mappings

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    subwaystation committed Sep 7, 2022
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  3. add wfmash_block_length_cmd

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    subwaystation committed Sep 7, 2022
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  4. wfmash_mash_kmer_cmd

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    subwaystation committed Sep 7, 2022
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  5. wfmash_mash_kmer_thres_cmd

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    subwaystation committed Sep 7, 2022
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  6. wfmash_sparse_map

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    subwaystation committed Sep 7, 2022
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  7. smoothxg_block_id_min

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    subwaystation committed Sep 7, 2022
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  8. smoothxg_poa_params_cmd

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    subwaystation committed Sep 7, 2022
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  9. seqwish sparse factor, but not activated

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    subwaystation committed Sep 7, 2022
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Commits on Sep 8, 2022

  1. smoothxg_temp_dir

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    subwaystation committed Sep 8, 2022
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  2. smoothxg_xpoa_stuff

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    subwaystation committed Sep 8, 2022
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  3. deactivate consensus graph

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    subwaystation committed Sep 8, 2022
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  4. update to the most recent PGGB Dockerfile

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    subwaystation committed Sep 8, 2022
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  5. seqwish_sparse_factor

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    subwaystation committed Sep 8, 2022
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  6. update default values in nextflow.config

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    subwaystation committed Sep 8, 2022
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  7. added vcfwave step in vg_deconstruct

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    subwaystation committed Sep 8, 2022
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  8. check for input indices and create them on the fly if required

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    subwaystation committed Sep 8, 2022
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Commits on Sep 9, 2022

  1. help message correction

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    subwaystation committed Sep 9, 2022
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Commits on Sep 12, 2022

  1. if you happy and you know it clap your hands!

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    subwaystation committed Sep 12, 2022
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  2. make the CI happy

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    subwaystation committed Sep 12, 2022
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  3. bring schema up to date

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    subwaystation committed Sep 12, 2022
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  4. bring schema up to date

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    subwaystation committed Sep 12, 2022
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  5. update help message

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    subwaystation committed Sep 12, 2022
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  6. another bug fix

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    subwaystation committed Sep 12, 2022
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