Important! Template update for nf-core/tools v3.1.0 #20
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name: nf-core template version comment | |
# This workflow is triggered on PRs to check if the pipeline template version matches the latest nf-core version. | |
# It posts a comment to the PR, even if it comes from a fork. | |
on: pull_request_target | |
jobs: | |
template_version: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out pipeline code | |
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
- name: Read template version from .nf-core.yml | |
uses: nichmor/minimal-read-yaml@v0.0.2 | |
id: read_yml | |
with: | |
config: ${{ github.workspace }}/.nf-core.yml | |
- name: Install nf-core | |
run: | | |
python -m pip install --upgrade pip | |
pip install nf-core==${{ steps.read_yml.outputs['nf_core_version'] }} | |
- name: Check nf-core outdated | |
id: nf_core_outdated | |
run: echo "OUTPUT=$(pip list --outdated | grep nf-core)" >> ${GITHUB_ENV} | |
- name: Post nf-core template version comment | |
uses: mshick/add-pr-comment@b8f338c590a895d50bcbfa6c5859251edc8952fc # v2 | |
if: | | |
contains(env.OUTPUT, 'nf-core') | |
with: | |
repo-token: ${{ secrets.NF_CORE_BOT_AUTH_TOKEN }} | |
allow-repeats: false | |
message: | | |
> [!WARNING] | |
> Newer version of the nf-core template is available. | |
> | |
> Your pipeline is using an old version of the nf-core template: ${{ steps.read_yml.outputs['nf_core_version'] }}. | |
> Please update your pipeline to the latest version. | |
> | |
> For more documentation on how to update your pipeline, please see the [nf-core documentation](https://github.com/nf-core/tools?tab=readme-ov-file#sync-a-pipeline-with-the-template) and [Synchronisation documentation](https://nf-co.re/docs/contributing/sync). | |
# |