Merge pull request #118 from PixelgenTechnologies/update-metromap-v1.4

Update metromap, bump conda versions
nf-core · Dec 13, 2024 · 2593897 · 2593897
2 parents c22e520 + c6205e6
commit 2593897
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -12,6 +12,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [[PR #113](https://github.com/nf-core/pixelator/pull/113)] - Fix validation issues after nf-core/tools v3.0.2 update
 - [[PR #114](https://github.com/nf-core/pixelator/pull/114)] - Remove `--save_recovered_components` options for graph outputs
 - [[PR #115](https://github.com/nf-core/pixelator/pull/115)] - Update containers for pixelator 0.19
+- [[PR #116](https://github.com/nf-core/pixelator/pull/116)] - Bump version to 1.4
+- [[PR #117](https://github.com/nf-core/pixelator/pull/117)] - Template update for nf-core/tools v3.1.0
+- [[PR #118](https://github.com/nf-core/pixelator/pull/118)] - Update metromap, bump conda versions
 
 ### Parameters
 

diff --git a/docs/images/nf-core-pixelator-metromap.svg b/docs/images/nf-core-pixelator-metromap.svg
diff --git a/modules/local/pixelator/collect_metadata.nf b/modules/local/pixelator/collect_metadata.nf
@@ -3,7 +3,7 @@ process PIXELATOR_COLLECT_METADATA {
     label 'process_single'
     cache false
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/list_options.nf b/modules/local/pixelator/list_options.nf
@@ -2,7 +2,7 @@ process PIXELATOR_LIST_OPTIONS {
     label 'process_single'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/amplicon/main.nf b/modules/local/pixelator/single-cell/amplicon/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_AMPLICON {
     label 'process_low'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/analysis/main.nf b/modules/local/pixelator/single-cell/analysis/main.nf
@@ -2,7 +2,7 @@ process PIXELATOR_ANALYSIS {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/annotate/main.nf b/modules/local/pixelator/single-cell/annotate/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_ANNOTATE {
     label 'process_high'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/collapse/main.nf b/modules/local/pixelator/single-cell/collapse/main.nf
@@ -2,7 +2,7 @@ process PIXELATOR_COLLAPSE {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/demux/main.nf b/modules/local/pixelator/single-cell/demux/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_DEMUX {
     label 'process_medium'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/graph/main.nf b/modules/local/pixelator/single-cell/graph/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_GRAPH {
     label 'process_high'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/layout/main.nf b/modules/local/pixelator/single-cell/layout/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_LAYOUT {
     label 'process_medium'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/qc/main.nf b/modules/local/pixelator/single-cell/qc/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_QC {
     label 'process_medium'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/report/main.nf b/modules/local/pixelator/single-cell/report/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_REPORT {
     label 'process_low'
 
 
-    conda "bioconda::pixelator=0.18.2"
+    conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"