fix: double singularity pixelator container reference

nf-core · Dec 19, 2024 · 4072406 · 4072406
1 parent 4cdeef6
commit 4072406
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Showing 11 changed files with 11 additions and 11 deletions.
diff --git a/modules/local/pixelator/collect_metadata.nf b/modules/local/pixelator/collect_metadata.nf
@@ -5,7 +5,7 @@ process PIXELATOR_COLLECT_METADATA {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     output:

diff --git a/modules/local/pixelator/list_options.nf b/modules/local/pixelator/list_options.nf
@@ -4,7 +4,7 @@ process PIXELATOR_LIST_OPTIONS {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     output:

diff --git a/modules/local/pixelator/single-cell/amplicon/main.nf b/modules/local/pixelator/single-cell/amplicon/main.nf
@@ -6,7 +6,7 @@ process PIXELATOR_AMPLICON {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/analysis/main.nf b/modules/local/pixelator/single-cell/analysis/main.nf
@@ -4,7 +4,7 @@ process PIXELATOR_ANALYSIS {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/annotate/main.nf b/modules/local/pixelator/single-cell/annotate/main.nf
@@ -5,7 +5,7 @@ process PIXELATOR_ANNOTATE {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/collapse/main.nf b/modules/local/pixelator/single-cell/collapse/main.nf
@@ -5,7 +5,7 @@ process PIXELATOR_COLLAPSE {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/demux/main.nf b/modules/local/pixelator/single-cell/demux/main.nf
@@ -5,7 +5,7 @@ process PIXELATOR_DEMUX {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/graph/main.nf b/modules/local/pixelator/single-cell/graph/main.nf
@@ -5,7 +5,7 @@ process PIXELATOR_GRAPH {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/layout/main.nf b/modules/local/pixelator/single-cell/layout/main.nf
@@ -5,7 +5,7 @@ process PIXELATOR_LAYOUT {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/qc/main.nf b/modules/local/pixelator/single-cell/qc/main.nf
@@ -5,7 +5,7 @@ process PIXELATOR_QC {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input:

diff --git a/modules/local/pixelator/single-cell/report/main.nf b/modules/local/pixelator/single-cell/report/main.nf
@@ -5,7 +5,7 @@ process PIXELATOR_REPORT {
 
     conda "bioconda::pixelator=0.19.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pixelator:pixelator:0.19.0--pyhdfd78af_0' :
+        'https://depot.galaxyproject.org/singularity/pixelator:0.19.0--pyhdfd78af_0' :
         'biocontainers/pixelator:0.19.0--pyhdfd78af_0' }"
 
     input: