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Merge pull request #91 from PixelgenTechnologies/feature/change-proce…
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…ss-high-to-use-64gb-ram

process_high->64GB ram/process_high_memory->128GB
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johandahlberg authored May 28, 2024
2 parents 7a769d9 + 71b413c commit c085f75
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [[PR #90](https://github.com/nf-core/pixelator/pull/90)] - Update pixelator to 0.17.1
- [[PR #90](https://github.com/nf-core/pixelator/pull/90)] - Add `pixelator single-cell layout` command
- [[PR #90](https://github.com/nf-core/pixelator/pull/90)] - The `graph` and `annotate` steps are now using `process_high` as their resource tags
- [[PR #91](https://github.com/nf-core/pixelator/pull/91)] - Set `process_high` to use 64GB of RAM and `process_high_memory` to use 128GB of RAM

### Software dependencies

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4 changes: 2 additions & 2 deletions conf/base.config
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Expand Up @@ -41,14 +41,14 @@ process {
}
withLabel:process_high {
cpus = { check_max( 12 * task.attempt, 'cpus' ) }
memory = { check_max( 72.GB * task.attempt, 'memory' ) }
memory = { check_max( 64.GB * task.attempt, 'memory' ) }
time = { check_max( 16.h * task.attempt, 'time' ) }
}
withLabel:process_long {
time = { check_max( 20.h * task.attempt, 'time' ) }
}
withLabel:process_high_memory {
memory = { check_max( 200.GB * task.attempt, 'memory' ) }
memory = { check_max( 128.GB * task.attempt, 'memory' ) }
}
withLabel:error_ignore {
errorStrategy = 'ignore'
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