Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Release nf-core/pixelator 1.2.0 #94

Merged
merged 31 commits into from
May 28, 2024
Merged
Changes from 1 commit
Commits
Show all changes
31 commits
Select commit Hold shift + click to select a range
50cb5d7
Template update for nf-core/tools version 2.14.0
nf-core-bot May 8, 2024
796c414
Template update for nf-core/tools version 2.14.1
nf-core-bot May 9, 2024
0ab9f89
Merge branch 'dev' into nf-core-template-merge-2.14.1
fbdtemme May 15, 2024
39c9fd9
Merge branch 'dev' into nf-core-template-merge-2.14.1
fbdtemme May 15, 2024
70fe195
Update to use pixelator 0.17.1, add layout command
johandahlberg May 24, 2024
e7d1d58
Make graph step use process_high resource
johandahlberg May 27, 2024
99275c6
Formatting fix
johandahlberg May 27, 2024
edab0dd
Skip layout in small test config
johandahlberg May 27, 2024
4a28425
Clean-up
johandahlberg May 27, 2024
07b0500
Update changelog
johandahlberg May 27, 2024
1d2fcde
Fix linting issue
johandahlberg May 27, 2024
bd29d2c
Pass layout to the report stage
johandahlberg May 27, 2024
1db4263
Fix copy-paste-error
johandahlberg May 27, 2024
ce90f8b
annotate step use `process_high` resources
johandahlberg May 27, 2024
1e557b2
Clean-up the changelog a bit
johandahlberg May 27, 2024
7a769d9
Merge pull request #90 from PixelgenTechnologies/feature/exe-1732-upd…
johandahlberg May 27, 2024
c41065b
process_high->64GB ram/process_high_memory->128GB
johandahlberg May 27, 2024
71b413c
Update changelog
johandahlberg May 27, 2024
c085f75
Merge pull request #91 from PixelgenTechnologies/feature/change-proce…
johandahlberg May 28, 2024
f1b288c
Minor documenation fixes
johandahlberg May 28, 2024
db761d1
Merge pull request #92 from PixelgenTechnologies/chore/minor-doc-fixes
johandahlberg May 28, 2024
4a1b1ed
Merge branch 'dev' into nf-core-template-merge-2.14.1
fbdtemme May 28, 2024
48dbe62
Fix template merge issues
fbdtemme May 28, 2024
64375e9
Remove some old nf-core lint opt-outs
fbdtemme May 28, 2024
f0bc911
Merge pull request #89 from nf-core/nf-core-template-merge-2.14.1
fbdtemme May 28, 2024
ea9548c
Merge RENAME_READS module functionality into PIXELATOR_AMPLICON
fbdtemme May 28, 2024
ca85ee4
Update CHANGELOG
fbdtemme May 28, 2024
6407896
Remove RENAME_READS from modules.config
fbdtemme May 28, 2024
7e470cc
Merge pull request #93 from PixelgenTechnologies/improve-read-renaming
fbdtemme May 28, 2024
a2b315e
Update conf/test.config
fbdtemme May 28, 2024
9bf3bf1
Update release date in CHANGELOG
fbdtemme May 28, 2024
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
process_high->64GB ram/process_high_memory->128GB
  • Loading branch information
johandahlberg committed May 27, 2024

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
commit c41065b1daf9c7884ad2efdf1facae6002181406
4 changes: 2 additions & 2 deletions conf/base.config
Original file line number Diff line number Diff line change
@@ -41,14 +41,14 @@ process {
}
withLabel:process_high {
cpus = { check_max( 12 * task.attempt, 'cpus' ) }
memory = { check_max( 72.GB * task.attempt, 'memory' ) }
memory = { check_max( 64.GB * task.attempt, 'memory' ) }
time = { check_max( 16.h * task.attempt, 'time' ) }
}
withLabel:process_long {
time = { check_max( 20.h * task.attempt, 'time' ) }
}
withLabel:process_high_memory {
memory = { check_max( 200.GB * task.attempt, 'memory' ) }
memory = { check_max( 128.GB * task.attempt, 'memory' ) }
}
withLabel:error_ignore {
errorStrategy = 'ignore'
Loading