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Update container logic #93

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Mar 24, 2023
Merged

Update container logic #93

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382c92c
Merge pull request #13 from nf-core/dev
jpfeuffer Apr 21, 2022
19ec5d2
Merge pull request #20 from nf-core/dev
jpfeuffer Apr 21, 2022
da524fc
Merge pull request #22 from nf-core/dev
jpfeuffer Apr 26, 2022
6e61bbc
Merge pull request #29 from nf-core/dev
jpfeuffer Apr 28, 2022
7f0eca8
Merge pull request #31 from nf-core/dev
jpfeuffer May 2, 2022
0c07ff8
Merge pull request #32 from nf-core/dev
jpfeuffer May 2, 2022
8a922bc
Merge pull request #33 from nf-core/dev
jpfeuffer May 2, 2022
6ffb0c9
Merge pull request #34 from nf-core/dev
jpfeuffer May 2, 2022
ee011ba
Merge pull request #48 from nf-core/dev
ypriverol Mar 20, 2023
0682a4b
Merge pull request #85 from nf-core/dev
ypriverol Mar 21, 2023
fa24e54
Make container selection logic consistent
sminot Mar 23, 2023
f83f091
more consistent formatting
fabianegli Mar 24, 2023
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7 changes: 3 additions & 4 deletions modules/local/openms/proteinquantifier/main.nf
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Expand Up @@ -3,10 +3,9 @@ process PROTEINQUANTIFIER {
label 'process_medium'

conda "bioconda::openms=2.9.1"
container "${ workflow.containerEngine == 'docker' && !task.ext.singularity_pull_docker_container ?
'quay.io/biocontainers/openms:2.9.1--h135471a_0' :
'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0'
}"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
'quay.io/biocontainers/openms:2.9.1--h135471a_0' }"

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path epi_filt_resolve
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6 changes: 3 additions & 3 deletions modules/local/openms/proteomicslfq/main.nf
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Expand Up @@ -3,9 +3,9 @@ process PROTEOMICSLFQ {
label 'process_high'

conda "bioconda::openms=2.9.1"
container "${ workflow.containerEngine == 'docker' && !task.ext.singularity_pull_docker_container ?
'quay.io/biocontainers/openms:2.9.1--h135471a_0' :
'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0'
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/openms:2.9.1--h135471a_0' :
'quay.io/biocontainers/openms:2.9.1--h135471a_0'
}"
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