update test config

nf-core · Sep 15, 2023 · 29c9c85 · 29c9c85
1 parent f1566cd
commit 29c9c85
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/conf/test.config b/conf/test.config
@@ -24,8 +24,8 @@ params {
     mito_name       = 'MT'
 
     // analysis params
-    skip_cnv_calling = true
-    skip_mt_analysis = true
+    skip_cnv_calling   = true
+    skip_mt_annotation = System.getenv("GITHUB_ACTIONS").equals(null) ? false : true // skip annotation on Github CI
 
     // Input data
     input          = 'https://raw.githubusercontent.com/nf-core/test-datasets/raredisease/testdata/samplesheet_trio.csv'