Merge pull request #524 from genomic-medicine-sweden/split-multiallel…

…ics-repeat Normalize repeat expansions
nf-core · Feb 29, 2024 · 9151e48 · 9151e48
2 parents 071951a + e44865e
commit 9151e48
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/conf/modules/call_repeat_expansions.config b/conf/modules/call_repeat_expansions.config
@@ -71,6 +71,7 @@ process {
     }
 
     withName: '.*CALL_REPEAT_EXPANSIONS:SPLIT_MULTIALLELICS_EXP' {
+        ext.args = '--output-type z --multiallelics -both'
         ext.prefix = { "${meta.id}_split_exp" }
     }