Merge pull request #470 from genomic-medicine-sweden/fixes

Updating vcf2cytosure and tiddit cov
nf-core · Jan 10, 2024 · a2e6812 · a2e6812
2 parents 4f50a3e + 4a20f49
commit a2e6812
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Showing 15 changed files with 382 additions and 61 deletions.
diff --git a/modules.json b/modules.json
@@ -449,9 +449,8 @@
                     },
                     "tiddit/cov": {
                         "branch": "master",
-                        "git_sha": "1c90a501d102b800c27697f5ef39a6e217ab1915",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/tiddit/cov/tiddit-cov.diff"
+                        "git_sha": "ae07bd3d3e229ca82bd94531648736d44367a391",
+                        "installed_by": ["modules"]
                     },
                     "tiddit/sv": {
                         "branch": "master",
@@ -475,9 +474,8 @@
                     },
                     "vcf2cytosure": {
                         "branch": "master",
-                        "git_sha": "2dba354d7c0a43a1e6d6ce26f408b4936d4ed619",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/vcf2cytosure/vcf2cytosure.diff"
+                        "git_sha": "8694793954175ddd3001ddfbc0e36782a674d8a7",
+                        "installed_by": ["modules"]
                     },
                     "vcfanno": {
                         "branch": "master",

diff --git a/modules/nf-core/tiddit/cov/environment.yml b/modules/nf-core/tiddit/cov/environment.yml
diff --git a/modules/nf-core/tiddit/cov/main.nf b/modules/nf-core/tiddit/cov/main.nf
diff --git a/modules/nf-core/tiddit/cov/meta.yml b/modules/nf-core/tiddit/cov/meta.yml
diff --git a/modules/nf-core/tiddit/cov/tests/main.nf.test b/modules/nf-core/tiddit/cov/tests/main.nf.test
diff --git a/modules/nf-core/tiddit/cov/tests/main.nf.test.snap b/modules/nf-core/tiddit/cov/tests/main.nf.test.snap
diff --git a/modules/nf-core/tiddit/cov/tests/nextflow.config b/modules/nf-core/tiddit/cov/tests/nextflow.config
diff --git a/modules/nf-core/tiddit/cov/tests/tags.yml b/modules/nf-core/tiddit/cov/tests/tags.yml
diff --git a/modules/nf-core/tiddit/cov/tiddit-cov.diff b/modules/nf-core/tiddit/cov/tiddit-cov.diff
diff --git a/modules/nf-core/vcf2cytosure/environment.yml b/modules/nf-core/vcf2cytosure/environment.yml
diff --git a/modules/nf-core/vcf2cytosure/meta.yml b/modules/nf-core/vcf2cytosure/meta.yml