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add metromap with core elements #428

Merged
merged 6 commits into from
Oct 3, 2023
Merged

add metromap with core elements #428

merged 6 commits into from
Oct 3, 2023

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ramprasadn
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@ramprasadn ramprasadn commented Sep 20, 2023 •
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PR checklist

This PR contains a metromap representation of our pipeline, highlighting only the core elements of the workflow.

Also, included a draft logo for the pipeline. Let me know what you guys think about it.

This could be different from what we are developing on the draw.io platform, where we can highlight the different inputs etc.,

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/raredisease branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Ensure the test suite passes (nextflow run . -profile test_one_sample,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Sep 20, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 52719d1

+| ✅ 153 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   2 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in WorkflowRaredisease.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-03 12:30:08

@ramprasadn ramprasadn marked this pull request as ready for review September 21, 2023 08:45
jemten
jemten approved these changes Oct 3, 2023
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Looks good! Nice to finally get this in place 🏅
When can expand and refine this as we add more tools and update the pipeline.

@ramprasadn ramprasadn merged commit 65bda6a into nf-core:dev Oct 3, 2023
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@ramprasadn ramprasadn deleted the metromap_core branch October 3, 2023 12:44
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@jemten jemten jemten approved these changes

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@ramprasadn @jemten