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Change hardcoded platform value to params.platform in modules/align_MT.config #475

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merged 3 commits into from
Jan 12, 2024
Merged

Change hardcoded platform value to params.platform in modules/align_MT.config #475

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0809a40
Change hardcoded platform value to params.platform
alkc Jan 11, 2024
a8b62e9
Update Changelog
alkc Jan 11, 2024
d07ddd6
Merge branch 'dev' into fix-hardcoded-platform
ramprasadn Jan 12, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -38,6 +38,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Replaced the parameter skip_mt_analysis which was used to turn on/off the mitochondrial workflow [#419](https://github.com/nf-core/raredisease/pull/419)
- Adds a new parameter skip_mt_annotation which can be used to turn on/off annotation and ranking for mitochondrial SNVs [#419](https://github.com/nf-core/raredisease/pull/419)
- Changed the name of the parameter from `skip_cnv_calling` to `skip_germlinecnvcaller` [#435](https://github.com/nf-core/raredisease/pull/435)
- Change hardcoded platform value to params.platform in align_MT.config [#475](https://github.com/nf-core/raredisease/pull/475)

### `Fixed`

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2 changes: 1 addition & 1 deletion conf/modules/align_MT.config
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Expand Up @@ -42,7 +42,7 @@ process {
ext.args = { [
"--VALIDATION_STRINGENCY LENIENT",
"--RGLB lib",
"--RGPL ILLUMINA",
"--RGPL ${params.platform}",
"--RGPU barcode",
"--RGSM ${meta.id}"
].join(' ').trim() }
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