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Update RG generation string #487

Merged
merged 2 commits into from
Jan 25, 2024
Merged

Update RG generation string #487

merged 2 commits into from
Jan 25, 2024

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ramprasadn
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PR checklist

Addresses #478

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/raredisease branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Ensure the test suite passes (nextflow run . -profile test_one_sample,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions GitHub Actions
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This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @ramprasadn,

It looks like this pull-request is has been made against the genomic-medicine-sweden/raredisease master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the genomic-medicine-sweden/raredisease dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

@ramprasadn ramprasadn changed the base branch from master to dev January 25, 2024 08:59
@github-actions GitHub Actions
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github-actions bot commented Jan 25, 2024 •
edited
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f086c5b

+| ✅ 155 tests passed       |+
#| ❔   6 tests were ignored |#
!| ❗   2 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in WorkflowRaredisease.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-raredisease_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-raredisease_logo_dark.png
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2024-01-25 09:02:24

@ramprasadn ramprasadn marked this pull request as ready for review January 25, 2024 09:20
@ramprasadn ramprasadn requested a review from jemten January 25, 2024 09:21
jemten
jemten approved these changes Jan 25, 2024
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👍

@ramprasadn ramprasadn merged commit 106ad82 into nf-core:dev Jan 25, 2024
@ramprasadn ramprasadn deleted the changeplatform branch February 2, 2024 16:56
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@jemten jemten jemten approved these changes

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@ramprasadn @jemten