Merge pull request #564 from atrigila/fix_rrnatranscript_bug

Fix `RRNATRANSCRIPT` bug not detecting input gtf

CHANGELOG.md

@@ -31,6 +31,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Fixed bug when trying to build indices behind a proxy and wget was unable to download arriba indices [#495](https://github.com/nf-core/rnafusion/issues/495)
 - Fixed bug in `FUSIONREPORT_DOWNLOAD` when building references with `--no_cosmic parameter` [#555](https://github.com/nf-core/rnafusion/issues/555)
 - Refactor structure in `FUSIONREPORT_DOWNLOAD` to use cosmic credentials in `ext.args` [#556](https://github.com/nf-core/rnafusion/issues/556)
+- Fixed bug in nf-core `RRNATRANSCRIPTS` module [#563](https://github.com/nf-core/rnafusion/issues/563)
 - Fixed bug in `GFFREAD` that caused output `gffread_fasta` not being produced [#565](https://github.com/nf-core/rnafusion/issues/565)
 
 ### Removed

modules.json

@@ -87,8 +87,9 @@
                     },
                     "rrnatranscripts": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["modules"]
+                        "git_sha": "812edf8cf702de42d2d8c7314d6f03b97e20abeb",
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/rrnatranscripts/rrnatranscripts.diff"
                     },
                     "salmon/index": {
                         "branch": "master",