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change(config) use institutional config by default #381

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merged 2 commits into from
Aug 25, 2023
Merged

change(config) use institutional config by default #381

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fbf1c2e
use institutional configs by default
fevac Aug 21, 2023
4c277dd
update changelog
fevac Aug 21, 2023
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Changed

- Use institutional configs by default [#381](https://github.com/nf-core/rnafusion/pull/381)

### Fixed

- Tail trimming for reverse reads [#379](https://github.com/nf-core/rnafusion/pull/379)
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10 changes: 5 additions & 5 deletions nextflow.config
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Expand Up @@ -137,11 +137,11 @@ try {

// Load nf-core/rnafusion custom profiles from different institutions.
// Warning: Uncomment only if a pipeline-specific instititutional config already exists on nf-core/configs!
// try {
// includeConfig "${params.custom_config_base}/pipeline/rnafusion.config"
// } catch (Exception e) {
// System.err.println("WARNING: Could not load nf-core/config/rnafusion profiles: ${params.custom_config_base}/pipeline/rnafusion.config")
// }
try {
includeConfig "${params.custom_config_base}/pipeline/rnafusion.config"
} catch (Exception e) {
System.err.println("WARNING: Could not load nf-core/config/rnafusion profiles: ${params.custom_config_base}/pipeline/rnafusion.config")
}


profiles {
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