Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update fusionreport to 2.1.5p4 to fix 403 error in downloading databases #403

Merged
merged 1 commit into from
Sep 18, 2023
Merged

Update fusionreport to 2.1.5p4 to fix 403 error in downloading databases #403

merged 1 commit into from
Sep 18, 2023

Conversation

rannick
Copy link
Collaborator

@rannick rannick commented Sep 18, 2023 •
edited
Loading

Closes: #402

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnafusion branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@rannick rannick self-assigned this Sep 18, 2023
@rannick rannick requested a review from fevac September 18, 2023 09:29
@github-actions
Copy link

github-actions bot commented Sep 18, 2023 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f876680

+| ✅ 157 tests passed       |+
!| ❗   1 tests had warnings |!

❗ Test warnings:

✅ Tests passed:

Run details

  • nf-core/tools version 2.9
  • Run at 2023-09-18 09:31:21

fevac
fevac approved these changes Sep 18, 2023
View reviewed changes
Copy link
Contributor

@fevac fevac left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

🚀

CHANGELOG.md
@@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Provide gene count file by default when running STAR_FOR_STARFUSION [#385](https://github.com/nf-core/rnafusion/pull/385)
- Fix fusion-report issue with MACOXS directories [#386](https://github.com/nf-core/rnafusion/pull/386)
- The fusion lists is updated to contain two branches, one in case no fusions are detected and one for if fusions are detected, that will be used to feed to fusioninspector, megafusion, arriba visualisation [#388](https://github.com/nf-core/rnafusion/pull/388)
- Update fusionreport to 2.1.5p4 to fix 403 error in downloading databases
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

add PR

@rannick rannick merged commit 14a69c2 into dev Sep 18, 2023
6 checks passed
@rannick rannick deleted the update_fusionreport branch September 18, 2023 09:36
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@fevac fevac fevac approved these changes

Assignees

@rannick rannick

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

multiprocessing.pool.MaybeEncodingError building reference for fusion-report
2 participants
@rannick @fevac