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Pull requests: nf-core/rnaseq

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Pull requests list

Fix HISAT2 issues: BAM CSI index with UMI deduplication
#1645 opened Dec 2, 2025 by pinin4fjords Loading…
3 tasks
1
1
Long merge rsem
#1642 opened Nov 27, 2025 by EladH1 Loading…
6 of 11 tasks
7
New module for contamination screening: Sylph
#1616 opened Oct 29, 2025 by egreenberg7 Loading…
3 of 11 tasks
6
Qc optimization
#1601 opened Aug 22, 2025 by edmundmiller Loading…
11 tasks
@edmundmiller
4
Correct typos in rnaseq DE analysis docs
#1569 opened Jun 10, 2025 by johnvusich Loading…
2 tasks done
1
Update to Nextflow 25.04
#1566 opened Jun 9, 2025 by bentsherman • Draft
2
ARM Megatests
#1529 opened Mar 26, 2025 by edmundmiller Loading…
@edmundmiller
12
Container configs
#1515 opened Mar 17, 2025 by edmundmiller Loading…
@edmundmiller
15
Try matthias' fix to download
#1439 opened Oct 23, 2024 by pinin4fjords • Draft
11 tasks
2
allow integer sample names
#1421 opened Oct 18, 2024 by idot Loading…
1 task
8
Update nextflow_schema.json
#1397 opened Oct 2, 2024 by rraadd88 Loading…
1 of 11 tasks
2
Copy optimized resources from Tower
#1209 opened Feb 6, 2024 by edmundmiller • Draft
@edmundmiller
4
Add NGSCheckMate Ready for review
#993 opened Mar 31, 2023 by SPPearce Loading…
6 of 9 tasks
9
ProTip! What’s not been updated in a month: updated:<2025-11-02.