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fix snapshots
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@nvnieuwk
nvnieuwk committed Jan 8, 2025
1 parent d9534bf commit c788544
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Showing 6 changed files with 472 additions and 37 deletions.
4 changes: 2 additions & 2 deletions tests/all_inputs.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -126,8 +126,8 @@
],
"meta": {
"nf-test": "0.9.1",
"nextflow": "24.10.1"
"nextflow": "24.10.3"
},
"timestamp": "2025-01-07T17:13:49.548731154"
"timestamp": "2025-01-08T13:56:22.79954652"
}
}
234 changes: 219 additions & 15 deletions tests/annotation.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,8 +1,80 @@
{
"Run with profile test | annotation with merge": {
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{
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"TABIX_TABIX": {
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"Workflow": {
"nf-core/rnavar": "v2.0.0dev"
}
},
[
"annotation",
"annotation/haplotypecaller",
Expand Down Expand Up @@ -185,15 +257,81 @@
]
],
"meta": {
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"nextflow": "24.09.0"
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"timestamp": "2024-10-11T14:54:33.842224"
"timestamp": "2025-01-08T13:44:12.561904068"
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"Run with profile test | annotation with vep": {
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},
[
"annotation",
"annotation/haplotypecaller",
Expand Down Expand Up @@ -363,15 +501,81 @@
]
],
"meta": {
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"nextflow": "24.09.0"
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"timestamp": "2024-10-11T14:49:38.621181"
"timestamp": "2025-01-08T13:37:37.774766173"
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"Run with profile test | annotation with snpeff": {
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"SNPEFF_SNPEFF": {
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"STAR_ALIGN": {
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"samtools": 1.18,
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"TABIX": {
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"TABIX_BGZIPTABIX": {
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"Workflow": {
"nf-core/rnavar": "v2.0.0dev"
}
},
[
"annotation",
"annotation/haplotypecaller",
Expand Down Expand Up @@ -437,9 +641,9 @@
]
],
"meta": {
"nf-test": "0.9.0",
"nextflow": "24.09.0"
"nf-test": "0.9.1",
"nextflow": "24.10.3"
},
"timestamp": "2024-10-11T14:46:10.437216"
"timestamp": "2025-01-08T13:31:39.422563362"
}
}
67 changes: 62 additions & 5 deletions tests/bam_csi.nf.test.snap
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Original file line number Diff line number Diff line change
@@ -1,8 +1,65 @@
{
"Run with profile test | bam_csi_index": {
"content": [
39,
null,
40,
{
"APPLYBQSR": {
"gatk4": "4.5.0.0"
},
"CAT_FASTQ": {
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},
"FASTQC": {
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},
"GATK4_BASERECALIBRATOR": {
"gatk4": "4.5.0.0"
},
"GATK4_BEDTOINTERVALLIST": {
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},
"GATK4_HAPLOTYPECALLER": {
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"GATK4_MERGEVCFS": {
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"GATK4_SPLITNCIGARREADS": {
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"PICARD_MARKDUPLICATES": {
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"SAMTOOLS_FLAGSTAT": {
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"SAMTOOLS_IDXSTATS": {
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"SAMTOOLS_INDEX": {
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"SAMTOOLS_MERGE": {
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"SAMTOOLS_SORT": {
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"STAR_ALIGN": {
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"samtools": 1.18,
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"TABIX": {
"tabix": "1.19.1"
},
"Workflow": {
"nf-core/rnavar": "v2.0.0dev"
}
},
[
"pipeline_info",
"pipeline_info/nf_core_pipeline_software_mqc_versions.yml",
Expand Down Expand Up @@ -43,9 +100,9 @@
]
],
"meta": {
"nf-test": "0.9.0",
"nextflow": "24.09.0"
"nf-test": "0.9.1",
"nextflow": "24.10.3"
},
"timestamp": "2024-10-11T14:57:45.737274"
"timestamp": "2025-01-08T14:02:00.162034514"
}
}
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