Code

Add bam/cram support#157

Code

Merged

nvnieuwk merged 8 commits intonf-core:devnf-core/rnavar:devfrom nvnieuwk:add-bam/cram-supportnvnieuwk/nf-core-rnavar:add-bam/cram-supportCopy head branch name to clipboardJan 8, 2025

+1,444-61

Commits

Commits on Jan 7, 2025

• update samplesheet schema

  nvnieuwk

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  cebbe92

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• add bam and cram samplesheet

  nvnieuwk

  committed
  eed191f

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• add new subwf prepare_alignment

  nvnieuwk

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  7f27a52

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• finish up the implementation

  nvnieuwk

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  c52c360

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• fix wrong fai input in markduplicates

  nvnieuwk

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  a9ec02d

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• fix and add tests

  nvnieuwk

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  aff0de8

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• update docs & changelog

  nvnieuwk

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  d9534bf

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Commits on Jan 8, 2025

• fix snapshots

  nvnieuwk

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  c788544

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