Merge pull request #51 from sk-sahu/dev

For minor release V1.1

.github/workflows/ci.yml

@@ -35,13 +35,13 @@ jobs:
 
       - name: Build new docker image
         if: env.MATCHED_FILES
-        run: docker build --no-cache . -t nfcore/scrnaseq:dev
+        run: docker build --no-cache . -t nfcore/scrnaseq:1.1.0
 
       - name: Pull docker image
         if: ${{ !env.MATCHED_FILES }}
         run: |
           docker pull nfcore/scrnaseq:dev
-          docker tag nfcore/scrnaseq:dev nfcore/scrnaseq:dev
+          docker tag nfcore/scrnaseq:dev nfcore/scrnaseq:1.1.0
 
       - name: Install Nextflow
         env:

CHANGELOG.md

@@ -3,6 +3,11 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v1.1.0 - 2021-03-24 "Olive Mercury Corgi"
+
+* Template update with latest nf-core/tools v1.13.2
+* Parameters JSON Schema added [#42](https://github.com/nf-core/scrnaseq/issues/42)
+
 ## V1.0.1dev
 
 * [25](https://github.com/nf-core/scrnaseq/issues/25) Fix small documentation error with wrong parameter for txp2gene

Dockerfile

@@ -11,7 +11,7 @@ RUN conda env create --quiet -f /environment.yml && conda clean -a
 RUN apt-get update && apt-get install -y libtbb2 pandoc-citeproc
 
 # Add conda installation dir to PATH (instead of doing 'conda activate')
-ENV PATH /opt/conda/envs/nf-core-scrnaseq-1.0.1dev/bin:$PATH
+ENV PATH /opt/conda/envs/nf-core-scrnaseq-1.1.0/bin:$PATH
 
 # Dump the details of the installed packages to a file for posterity
-RUN conda env export --name nf-core-scrnaseq-1.0.1dev > nf-core-scrnaseq-1.0.1dev.yml
+RUN conda env export --name nf-core-scrnaseq-1.1.0 > nf-core-scrnaseq-1.1.0.yml

environment.yml

@@ -1,6 +1,6 @@
 # You can use this file to create a conda environment for this pipeline:
 #   conda env create -f environment.yml
-name: nf-core-scrnaseq-1.0.1dev
+name: nf-core-scrnaseq-1.1.0
 channels:
   - conda-forge
   - bioconda

nextflow.config

@@ -68,7 +68,7 @@ params {
 
 // Container slug. Stable releases should specify release tag!
 // Developmental code should specify :dev
-process.container = 'nfcore/scrnaseq:dev'
+process.container = 'nfcore/scrnaseq:1.1.0'
 
 // Load base.config by default for all pipelines
 includeConfig 'conf/base.config'
@@ -172,7 +172,7 @@ manifest {
   description = 'Pipeline for processing of 10xGenomics single cell rnaseq data'
   mainScript = 'main.nf'
   nextflowVersion = '>=20.10.0'
-  version = '1.0.1dev'
+  version = '1.1.0'
 }
 
 // Function to ensure that resource requirements don't go beyond